IGVFDS9193ENEI

released
{
    "@context": "/terms/",
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    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS9193ENEI",
    "aliases": [
        "chongyuan-luo:pgp_snmct_C37_day9"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003662/",
        "assay_slims": [
            "multiome"
        ],
        "status": "released",
        "term_name": "single-nucleus methylcytosine and transcriptome sequencing assay"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS9193ENEI](/measurement-sets/IGVFDS9193ENEI/) has sequence file(s): [IGVFFI3374MNFG](/sequence-files/IGVFFI3374MNFG/), [IGVFFI2948AHGN](/sequence-files/IGVFFI2948AHGN/), [IGVFFI1919BRFI](/sequence-files/IGVFFI1919BRFI/), [IGVFFI4710DUYB](/sequence-files/IGVFFI4710DUYB/), [IGVFFI0496TLVL](/sequence-files/IGVFFI0496TLVL/), [IGVFFI7936KYLG](/sequence-files/IGVFFI7936KYLG/), [IGVFFI1540VLFT](/sequence-files/IGVFFI1540VLFT/), [IGVFFI9454MKUE](/sequence-files/IGVFFI9454MKUE/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS9193ENEI/"
            }
        ],
        "WARNING": [
            {
                "category": "missing analysis",
                "detail": "Measurement set [IGVFDS9193ENEI](/measurement-sets/IGVFDS9193ENEI/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_for",
                "path": "/measurement-sets/IGVFDS9193ENEI/"
            }
        ]
    },
    "award": {
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        "component": "networks",
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            "@id": "/users/53ea51d1-5c61-4f1e-99fb-ef857bd652a3/",
            "title": "Chongyuan Luo"
        },
        "title": "Leveraging genetic variation to dissect gene regulatory networks of reprogramming to pluripotency"
    },
    "control_for": [],
    "creation_timestamp": "2024-11-15T19:28:34.720673+00:00",
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            "@id": "/human-donors/IGVFDO0351NYZH/",
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            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
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        {
            "@id": "/sequence-files/IGVFFI7936KYLG/",
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            "@id": "/sequence-files/IGVFFI9454MKUE/",
            "accession": "IGVFFI9454MKUE",
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    "input_for": [],
    "lab": {
        "@id": "/labs/chongyuan-luo/",
        "title": "Chongyuan Luo, UCLA"
    },
    "preferred_assay_title": "snMCT-seq",
    "protocols": [
        "https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2"
    ],
    "release_timestamp": "2025-02-11T00:54:24.258436+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM4191QVFQ/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4191QVFQ",
            "aliases": [
                "chongyuan-luo:C37_day9"
            ],
            "classifications": [
                "reprogrammed cell specimen"
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            "institutional_certificates": [
                {
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                    "certificate_identifier": "IP107-02",
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                    "@id": "/sample-terms/CL_0000057/",
                    "@type": [
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                        "Item"
                    ],
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                    "summary": "fibroblast",
                    "term_name": "fibroblast"
                }
            ],
            "status": "released",
            "summary": "fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 9 days, Homo sapiens",
            "targeted_sample_term": {
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                "status": "released",
                "term_name": "induced pluripotent stem cell"
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            "taxa": "Homo sapiens"
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    "submitted_by": {
        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
        "title": "Terence Li"
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    "submitted_files_timestamp": "2024-11-16T01:19:38.665957+00:00",
    "summary": "snMCT-seq",
    "uuid": "85fae877-0f28-48e9-9cd9-bedd983c9214"
}