IGVFDS9168ZKDC

released

File Set Type

experimental data

Summary

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Assay Term

in vitro CRISPR screen using flow cytometry

Targeted Genes

KITLG

Sample Summaries

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Construct Library Sets

IGVFDS7846UISG guide (sgRNA) library targeting accessible genome regions in many genomic loci

Protocols

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

Aliases

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR1_S1

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR2_S7

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR3_S97

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR4_S103

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8111MLZW

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item

Accession

Aliases

Sex

Taxa

IGVFDO0384OZRW

igvf:donor_of_HCT116

male

Homo sapiens

Auxiliary Datasets

2 items

Files

IGVFDS3199FLOT

AuxiliarySet

gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

IGVFFI9053ATLK, IGVFFI3274GRZY, IGVFFI2171OGJO, IGVFFI9605MXIW

jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR1_S1
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR2_S7
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR3_S97
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR4_S103

Jesse Engreitz, Stanford

IGVFDS9621FJCZ

AuxiliarySet

cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets

IGVFFI8500GKDJ