{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9080CILW/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9080CILW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9080CILW](/measurement-sets/IGVFDS9080CILW/) has sequence file(s) [IGVFFI2734EQMX](/sequence-files/IGVFFI2734EQMX/), [IGVFFI5745TWPY](/sequence-files/IGVFFI5745TWPY/), [IGVFFI3887XUHJ](/sequence-files/IGVFFI3887XUHJ/), [IGVFFI2777SWYW](/sequence-files/IGVFFI2777SWYW/), [IGVFFI0784JLER](/sequence-files/IGVFFI0784JLER/), [IGVFFI9548OWQS](/sequence-files/IGVFFI9548OWQS/), [IGVFFI8103TUQD](/sequence-files/IGVFFI8103TUQD/), [IGVFFI6978CSMX](/sequence-files/IGVFFI6978CSMX/), [IGVFFI9970EBKS](/sequence-files/IGVFFI9970EBKS/), [IGVFFI8239KYGI](/sequence-files/IGVFFI8239KYGI/), [IGVFFI4313OJHH](/sequence-files/IGVFFI4313OJHH/), [IGVFFI5268OCZE](/sequence-files/IGVFFI5268OCZE/), [IGVFFI1914GPLU](/sequence-files/IGVFFI1914GPLU/), [IGVFFI5958TAXN](/sequence-files/IGVFFI5958TAXN/), [IGVFFI9638URWZ](/sequence-files/IGVFFI9638URWZ/), [IGVFFI1528OAKE](/sequence-files/IGVFFI1528OAKE/), [IGVFFI2209NQUW](/sequence-files/IGVFFI2209NQUW/), [IGVFFI8517DEBM](/sequence-files/IGVFFI8517DEBM/), [IGVFFI2536UMHT](/sequence-files/IGVFFI2536UMHT/), [IGVFFI6965TRNF](/sequence-files/IGVFFI6965TRNF/), [IGVFFI8102YJHH](/sequence-files/IGVFFI8102YJHH/), [IGVFFI6911LHPR](/sequence-files/IGVFFI6911LHPR/), [IGVFFI9077FLFQ](/sequence-files/IGVFFI9077FLFQ/), [IGVFFI9857GLTM](/sequence-files/IGVFFI9857GLTM/), [IGVFFI6725YAKE](/sequence-files/IGVFFI6725YAKE/), [IGVFFI7007URDN](/sequence-files/IGVFFI7007URDN/), [IGVFFI9729UPTH](/sequence-files/IGVFFI9729UPTH/), [IGVFFI5138PGXZ](/sequence-files/IGVFFI5138PGXZ/), [IGVFFI3026SPYK](/sequence-files/IGVFFI3026SPYK/), [IGVFFI9588DRGV](/sequence-files/IGVFFI9588DRGV/), [IGVFFI0965VKXK](/sequence-files/IGVFFI0965VKXK/), [IGVFFI8387JJGS](/sequence-files/IGVFFI8387JJGS/), [IGVFFI2780WSBU](/sequence-files/IGVFFI2780WSBU/), [IGVFFI2290PFOF](/sequence-files/IGVFFI2290PFOF/), [IGVFFI4489LORS](/sequence-files/IGVFFI4489LORS/), [IGVFFI8171WIRK](/sequence-files/IGVFFI8171WIRK/), [IGVFFI4105XFFR](/sequence-files/IGVFFI4105XFFR/), [IGVFFI6943NLVX](/sequence-files/IGVFFI6943NLVX/), [IGVFFI0291WWOF](/sequence-files/IGVFFI0291WWOF/), [IGVFFI1660TKRZ](/sequence-files/IGVFFI1660TKRZ/), [IGVFFI1771JIAJ](/sequence-files/IGVFFI1771JIAJ/), [IGVFFI6466OUUC](/sequence-files/IGVFFI6466OUUC/), [IGVFFI7773FRKU](/sequence-files/IGVFFI7773FRKU/), [IGVFFI0301XWXP](/sequence-files/IGVFFI0301XWXP/), [IGVFFI7855EYVT](/sequence-files/IGVFFI7855EYVT/), [IGVFFI6225EMSE](/sequence-files/IGVFFI6225EMSE/), [IGVFFI2340ACGJ](/sequence-files/IGVFFI2340ACGJ/), [IGVFFI7618CLSB](/sequence-files/IGVFFI7618CLSB/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9080CILW/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9080CILW](/measurement-sets/IGVFDS9080CILW/) has sequence file(s): [IGVFFI2734EQMX](/sequence-files/IGVFFI2734EQMX/), [IGVFFI5745TWPY](/sequence-files/IGVFFI5745TWPY/), [IGVFFI3887XUHJ](/sequence-files/IGVFFI3887XUHJ/), [IGVFFI2777SWYW](/sequence-files/IGVFFI2777SWYW/), [IGVFFI0784JLER](/sequence-files/IGVFFI0784JLER/), [IGVFFI9548OWQS](/sequence-files/IGVFFI9548OWQS/), [IGVFFI8103TUQD](/sequence-files/IGVFFI8103TUQD/), [IGVFFI6978CSMX](/sequence-files/IGVFFI6978CSMX/), [IGVFFI9970EBKS](/sequence-files/IGVFFI9970EBKS/), [IGVFFI8239KYGI](/sequence-files/IGVFFI8239KYGI/), [IGVFFI4313OJHH](/sequence-files/IGVFFI4313OJHH/), [IGVFFI5268OCZE](/sequence-files/IGVFFI5268OCZE/), [IGVFFI1914GPLU](/sequence-files/IGVFFI1914GPLU/), [IGVFFI5958TAXN](/sequence-files/IGVFFI5958TAXN/), [IGVFFI9638URWZ](/sequence-files/IGVFFI9638URWZ/), [IGVFFI1528OAKE](/sequence-files/IGVFFI1528OAKE/), [IGVFFI2209NQUW](/sequence-files/IGVFFI2209NQUW/), [IGVFFI8517DEBM](/sequence-files/IGVFFI8517DEBM/), [IGVFFI2536UMHT](/sequence-files/IGVFFI2536UMHT/), [IGVFFI6965TRNF](/sequence-files/IGVFFI6965TRNF/), [IGVFFI8102YJHH](/sequence-files/IGVFFI8102YJHH/), [IGVFFI6911LHPR](/sequence-files/IGVFFI6911LHPR/), [IGVFFI9077FLFQ](/sequence-files/IGVFFI9077FLFQ/), [IGVFFI9857GLTM](/sequence-files/IGVFFI9857GLTM/), [IGVFFI6725YAKE](/sequence-files/IGVFFI6725YAKE/), [IGVFFI7007URDN](/sequence-files/IGVFFI7007URDN/), [IGVFFI9729UPTH](/sequence-files/IGVFFI9729UPTH/), [IGVFFI5138PGXZ](/sequence-files/IGVFFI5138PGXZ/), [IGVFFI3026SPYK](/sequence-files/IGVFFI3026SPYK/), [IGVFFI9588DRGV](/sequence-files/IGVFFI9588DRGV/), [IGVFFI0965VKXK](/sequence-files/IGVFFI0965VKXK/), [IGVFFI8387JJGS](/sequence-files/IGVFFI8387JJGS/), [IGVFFI2780WSBU](/sequence-files/IGVFFI2780WSBU/), [IGVFFI2290PFOF](/sequence-files/IGVFFI2290PFOF/), [IGVFFI4489LORS](/sequence-files/IGVFFI4489LORS/), [IGVFFI8171WIRK](/sequence-files/IGVFFI8171WIRK/), [IGVFFI4105XFFR](/sequence-files/IGVFFI4105XFFR/), [IGVFFI6943NLVX](/sequence-files/IGVFFI6943NLVX/), [IGVFFI0291WWOF](/sequence-files/IGVFFI0291WWOF/), [IGVFFI1660TKRZ](/sequence-files/IGVFFI1660TKRZ/), [IGVFFI1771JIAJ](/sequence-files/IGVFFI1771JIAJ/), [IGVFFI6466OUUC](/sequence-files/IGVFFI6466OUUC/), [IGVFFI7773FRKU](/sequence-files/IGVFFI7773FRKU/), [IGVFFI0301XWXP](/sequence-files/IGVFFI0301XWXP/), [IGVFFI7855EYVT](/sequence-files/IGVFFI7855EYVT/), [IGVFFI6225EMSE](/sequence-files/IGVFFI6225EMSE/), [IGVFFI2340ACGJ](/sequence-files/IGVFFI2340ACGJ/), [IGVFFI7618CLSB](/sequence-files/IGVFFI7618CLSB/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9080CILW/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9682UDFK](/in-vitro-systems/IGVFSM9682UDFK/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9682UDFK/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9080CILW](/measurement-sets/IGVFDS9080CILW/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9080CILW/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "718b62e6-a01c-4a01-b802-98e4a09c0f68"
}