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IGVFDS9072MPPD
IGVFDS9072MPPD
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP004_G5_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1677UIGM
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
8
671 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3236ZZOC
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
5
768 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3536LEJJ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
5
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3771PCVM
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
6
205 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4018EDMB
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
8
228 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4139KHWH
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
8
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5147OYDM
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
6
251 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6092IPEG
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
7
238 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6300TAHD
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
5
257 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6332OKXL
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
6
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1516CHMP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2801HZMZ
igvf:corces_donor_BANN1028
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO8344LUQZ
igvf:corces_donor_BANN0621
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0356QKID
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP004_G5_ATAC
Ryan Corces, Gladstone Institute UCSF