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INDEXED
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MeasurementSet
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IGVFDS9059ORGF
IGVFDS9059ORGF
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_derived DSS21BC-DSS-m1,DSS21BC-DSS-m2,DSS21BC-DSS-m3; Control DSS21BC-DSS-m7,DSS21BC-DSS-m8,DSS21BC-DSS-m9
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
Protocols
https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set30
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2751XKQB
fastq
reads
I1
1
Barcode index
IGVFFI8401ABRQ
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI6167AJYF
fastq
reads
R1
1
Read 1
IGVFFI8401ABRQ
Illumina NovaSeq 6000
2.0 GB
Jason Buenrostro, Broad
validated
IGVFFI8793QBEK
fastq
reads
R2
1
Read 2
IGVFFI8401ABRQ
Illumina NovaSeq 6000
2.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4239FRER
InVitroSystem
colonic epithelium
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
Donors
6 items
Accession
Aliases
Sex
Taxa
IGVFDO4379PNRX
buenrostro-bernstein:surya-DSS21BC-DSS-m2
unspecified
Mus musculus
IGVFDO4498WUFA
buenrostro-bernstein:surya-DSS21BC-DSS-m7
unspecified
Mus musculus
IGVFDO4618QNAL
buenrostro-bernstein:surya-DSS21BC-DSS-m8
unspecified
Mus musculus
IGVFDO5516DGOZ
buenrostro-bernstein:surya-DSS21BC-DSS-m1
unspecified
Mus musculus
IGVFDO6069WQXD
buenrostro-bernstein:surya-DSS21BC-DSS-m3
unspecified
Mus musculus
IGVFDO6240POWU
buenrostro-bernstein:surya-DSS21BC-DSS-m9
unspecified
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5536ZQMO
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:surya-mouse-colitis-invitro-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
7 items
Accession
Type
Summary
Aliases
Lab
IGVFDS0255ZBJH
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set35
Jason Buenrostro, Broad
IGVFDS0262EFJS
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set34
Jason Buenrostro, Broad
IGVFDS2183INAQ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set37
Jason Buenrostro, Broad
IGVFDS3674UEBD
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set33
Jason Buenrostro, Broad
IGVFDS3954OIWN
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set31
Jason Buenrostro, Broad
IGVFDS6770YNZR
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set32
Jason Buenrostro, Broad
IGVFDS7053XLPM
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set36
Jason Buenrostro, Broad