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MeasurementSet
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IGVFDS9058STTC
IGVFDS9058STTC
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP009_G4_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0391SXEJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HGTLT3
3
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1750MKDV
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
4
395 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2539NKJG
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
1
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2927VVBM
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
1
394 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3000GLBM
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HGTLT3
2
850 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3246LHOZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
2
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3705BHGN
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
3
406 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4031JIHF
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HGTLT3
3
864 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4292HSCO
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
4
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5647FHSV
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
2
404 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9386ETNP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3397BHVF
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP009_G4_RNA
Ryan Corces, Gladstone Institute UCSF