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IGVFDS9058STTC
IGVFDS9058STTC
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP009_G4_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0391SXEJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HGTLT3
3
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1750MKDV
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
4
395 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2539NKJG
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
1
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2927VVBM
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
1
394 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3000GLBM
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HGTLT3
2
850 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3246LHOZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
2
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3705BHGN
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
3
406 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4031JIHF
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HGTLT3
3
864 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4292HSCO
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HGTLT3
4
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5647FHSV
fastq
reads
I1
1
Illumina NovaSeq X
223HGTLT3
2
404 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9386ETNP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3397BHVF
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP009_G4_RNA
Ryan Corces, Gladstone Institute UCSF