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INDEXED
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MeasurementSet
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IGVFDS9017GOUG
IGVFDS9017GOUG
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 173)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 360
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
6 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2736BOPU
fastq
reads
R1
3983
Read 1
IGVFFI0050JWUM
Illumina NovaSeq X
22523KLT3
2.0 GB
Jason Buenrostro, Broad
validated
IGVFFI3150BKZI
fastq
reads
R2
3947
Read 2
IGVFFI3922MZKS
Illumina NovaSeq X
22523KLT3
861 MB
Jason Buenrostro, Broad
validated
IGVFFI4237HKBQ
fastq
reads
R2
3983
Read 2
IGVFFI0050JWUM
Illumina NovaSeq X
22523KLT3
936 MB
Jason Buenrostro, Broad
validated
IGVFFI7599QNZK
fastq
reads
I1
3983
Barcode index
IGVFFI0050JWUM
Illumina NovaSeq X
22523KLT3
899 MB
Jason Buenrostro, Broad
validated
IGVFFI8300NHAU
fastq
reads
I1
3947
Barcode index
IGVFFI3922MZKS
Illumina NovaSeq X
22523KLT3
831 MB
Jason Buenrostro, Broad
validated
IGVFFI9182XKQN
fastq
reads
R1
3947
Read 1
IGVFFI3922MZKS
Illumina NovaSeq X
22523KLT3
1.8 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9181DMVC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 173)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5710EPSM
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 405
Jason Buenrostro, Broad