{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8990INRL",
"aliases": [
"bradley-bernstein:scRNA Lib 40",
"buenrostro-bernstein:scRNA Lib 40"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8990INRL](/measurement-sets/IGVFDS8990INRL/) has sequence file(s): [IGVFFI6688XBGX](/sequence-files/IGVFFI6688XBGX/), [IGVFFI9327FDFS](/sequence-files/IGVFFI9327FDFS/), [IGVFFI6114QISG](/sequence-files/IGVFFI6114QISG/), [IGVFFI2109HPFE](/sequence-files/IGVFFI2109HPFE/), [IGVFFI4855TKVA](/sequence-files/IGVFFI4855TKVA/), [IGVFFI4985BFJV](/sequence-files/IGVFFI4985BFJV/), [IGVFFI8573QCYV](/sequence-files/IGVFFI8573QCYV/), [IGVFFI5898PZEA](/sequence-files/IGVFFI5898PZEA/), [IGVFFI2879RJAR](/sequence-files/IGVFFI2879RJAR/), [IGVFFI7398NMEE](/sequence-files/IGVFFI7398NMEE/), [IGVFFI0599GVVD](/sequence-files/IGVFFI0599GVVD/), [IGVFFI7953CUBD](/sequence-files/IGVFFI7953CUBD/), [IGVFFI4338KJXG](/sequence-files/IGVFFI4338KJXG/), [IGVFFI4875YPYR](/sequence-files/IGVFFI4875YPYR/), [IGVFFI7342GVFK](/sequence-files/IGVFFI7342GVFK/), [IGVFFI2596EOLQ](/sequence-files/IGVFFI2596EOLQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8990INRL/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0835KPSB](/primary-cells/IGVFSM0835KPSB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0835KPSB/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8990INRL](/measurement-sets/IGVFDS8990INRL/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8990INRL/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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],
"accession": "IGVFSM0835KPSB",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 7",
"buenrostro-bernstein:BioSam 4566_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:13.259314+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "af78a6d2-1a64-43bf-8202-5bb2a0be1bd1"
}