IGVFDS8965MWPW

1{
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10    "aliases": [
11        "igvf:corces_measurementSet_X005_G8_RNA"
12    ],
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15        "assay_slims": [
16            "gene expression"
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18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
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361                "detail": "Preview human donor [IGVFDO0180JQCL](/human-donors/IGVFDO0180JQCL/) has in progress subobject phenotypic feature [d94cc348-4571-4d2f-9e2c-1ae4e0c4c857](/phenotypic-features/d94cc348-4571-4d2f-9e2c-1ae4e0c4c857/).",
362                "level": 30,
363                "level_name": "INTERNAL_ACTION",
364                "name": "audit_item_status",
365                "path": "/human-donors/IGVFDO0180JQCL/"
366            },
367            {
368                "category": "mismatched status",
369                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67](/phenotypic-features/b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67/).",
370                "level": 30,
371                "level_name": "INTERNAL_ACTION",
372                "name": "audit_item_status",
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374            },
375            {
376                "category": "mismatched status",
377                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [0b83aa3d-f968-4f99-9ed1-6035e64cf81d](/phenotypic-features/0b83aa3d-f968-4f99-9ed1-6035e64cf81d/).",
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382            },
383            {
384                "category": "mismatched status",
385                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c](/phenotypic-features/1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c/).",
386                "level": 30,
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388                "name": "audit_item_status",
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390            },
391            {
392                "category": "mismatched status",
393                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [25df185e-787e-41d8-b161-a524d1183f55](/phenotypic-features/25df185e-787e-41d8-b161-a524d1183f55/).",
394                "level": 30,
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396                "name": "audit_item_status",
397                "path": "/human-donors/IGVFDO6013FYCW/"
398            },
399            {
400                "category": "mismatched status",
401                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [61f3a82b-e754-457c-949c-01aeff12f1e1](/phenotypic-features/61f3a82b-e754-457c-949c-01aeff12f1e1/).",
402                "level": 30,
403                "level_name": "INTERNAL_ACTION",
404                "name": "audit_item_status",
405                "path": "/human-donors/IGVFDO6013FYCW/"
406            },
407            {
408                "category": "mismatched status",
409                "detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b1bac7dd-412a-460a-9336-044c2b41f36b](/phenotypic-features/b1bac7dd-412a-460a-9336-044c2b41f36b/).",
410                "level": 30,
411                "level_name": "INTERNAL_ACTION",
412                "name": "audit_item_status",
413                "path": "/human-donors/IGVFDO6013FYCW/"
414            },
415            {
416                "category": "mismatched status",
417                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [3e9cf626-9ed1-49cb-a08d-99e7e9d01e03](/phenotypic-features/3e9cf626-9ed1-49cb-a08d-99e7e9d01e03/).",
418                "level": 30,
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421                "path": "/human-donors/IGVFDO0112XZXT/"
422            },
423            {
424                "category": "mismatched status",
425                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [f3293daa-5b2a-482d-b783-e74292e01215](/phenotypic-features/f3293daa-5b2a-482d-b783-e74292e01215/).",
426                "level": 30,
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429                "path": "/human-donors/IGVFDO0112XZXT/"
430            },
431            {
432                "category": "mismatched status",
433                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [5bbb08a5-85e9-4c47-b3a0-47e8c124020a](/phenotypic-features/5bbb08a5-85e9-4c47-b3a0-47e8c124020a/).",
434                "level": 30,
435                "level_name": "INTERNAL_ACTION",
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437                "path": "/human-donors/IGVFDO0112XZXT/"
438            },
439            {
440                "category": "mismatched status",
441                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [c1af321e-187f-465d-82c2-7f3167821d82](/phenotypic-features/c1af321e-187f-465d-82c2-7f3167821d82/).",
442                "level": 30,
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445                "path": "/human-donors/IGVFDO0112XZXT/"
446            },
447            {
448                "category": "mismatched status",
449                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [d8974890-5de1-43a0-bbdd-662642652835](/phenotypic-features/d8974890-5de1-43a0-bbdd-662642652835/).",
450                "level": 30,
451                "level_name": "INTERNAL_ACTION",
452                "name": "audit_item_status",
453                "path": "/human-donors/IGVFDO0112XZXT/"
454            },
455            {
456                "category": "mismatched status",
457                "detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [f47cb079-e39d-44ed-aa9b-ae76dd89e912](/phenotypic-features/f47cb079-e39d-44ed-aa9b-ae76dd89e912/).",
458                "level": 30,
459                "level_name": "INTERNAL_ACTION",
460                "name": "audit_item_status",
461                "path": "/human-donors/IGVFDO0112XZXT/"
462            },
463            {
464                "category": "mismatched status",
465                "detail": "Preview human donor [IGVFDO7306YMGC](/human-donors/IGVFDO7306YMGC/) has in progress subobject phenotypic feature [6f2ca47b-41f5-4df7-873b-985b82301aca](/phenotypic-features/6f2ca47b-41f5-4df7-873b-985b82301aca/).",
466                "level": 30,
467                "level_name": "INTERNAL_ACTION",
468                "name": "audit_item_status",
469                "path": "/human-donors/IGVFDO7306YMGC/"
470            },
471            {
472                "category": "mismatched status",
473                "detail": "Preview human donor [IGVFDO7306YMGC](/human-donors/IGVFDO7306YMGC/) has in progress subobject phenotypic feature [b7d1671f-0cb9-42ce-84bf-70d7508a2dc8](/phenotypic-features/b7d1671f-0cb9-42ce-84bf-70d7508a2dc8/).",
474                "level": 30,
475                "level_name": "INTERNAL_ACTION",
476                "name": "audit_item_status",
477                "path": "/human-donors/IGVFDO7306YMGC/"
478            },
479            {
480                "category": "mismatched status",
481                "detail": "Preview human donor [IGVFDO7306YMGC](/human-donors/IGVFDO7306YMGC/) has in progress subobject phenotypic feature [cc8814f1-9ac1-45dc-ac47-102a624b5880](/phenotypic-features/cc8814f1-9ac1-45dc-ac47-102a624b5880/).",
482                "level": 30,
483                "level_name": "INTERNAL_ACTION",
484                "name": "audit_item_status",
485                "path": "/human-donors/IGVFDO7306YMGC/"
486            },
487            {
488                "category": "mismatched status",
489                "detail": "Preview human donor [IGVFDO7306YMGC](/human-donors/IGVFDO7306YMGC/) has in progress subobject phenotypic feature [c2d841ed-9a79-4029-8f19-938166bb96ee](/phenotypic-features/c2d841ed-9a79-4029-8f19-938166bb96ee/).",
490                "level": 30,
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492                "name": "audit_item_status",
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494            },
495            {
496                "category": "mismatched status",
497                "detail": "Preview human donor [IGVFDO7306YMGC](/human-donors/IGVFDO7306YMGC/) has in progress subobject phenotypic feature [52f2a871-4f9a-4125-8b75-21b86db71234](/phenotypic-features/52f2a871-4f9a-4125-8b75-21b86db71234/).",
498                "level": 30,
499                "level_name": "INTERNAL_ACTION",
500                "name": "audit_item_status",
501                "path": "/human-donors/IGVFDO7306YMGC/"
502            },
503            {
504                "category": "mismatched status",
505                "detail": "Preview human donor [IGVFDO3628ZBBZ](/human-donors/IGVFDO3628ZBBZ/) has in progress subobject phenotypic feature [f31addd5-72e8-406b-872b-b9f40cd6e3a4](/phenotypic-features/f31addd5-72e8-406b-872b-b9f40cd6e3a4/).",
506                "level": 30,
507                "level_name": "INTERNAL_ACTION",
508                "name": "audit_item_status",
509                "path": "/human-donors/IGVFDO3628ZBBZ/"
510            },
511            {
512                "category": "mismatched status",
513                "detail": "Preview human donor [IGVFDO3628ZBBZ](/human-donors/IGVFDO3628ZBBZ/) has in progress subobject phenotypic feature [db447dd4-ae2a-435f-af66-c26e66a906df](/phenotypic-features/db447dd4-ae2a-435f-af66-c26e66a906df/).",
514                "level": 30,
515                "level_name": "INTERNAL_ACTION",
516                "name": "audit_item_status",
517                "path": "/human-donors/IGVFDO3628ZBBZ/"
518            },
519            {
520                "category": "mismatched status",
521                "detail": "Preview human donor [IGVFDO3628ZBBZ](/human-donors/IGVFDO3628ZBBZ/) has in progress subobject phenotypic feature [0db57625-0af4-4d61-a9f4-831242ca64e6](/phenotypic-features/0db57625-0af4-4d61-a9f4-831242ca64e6/).",
522                "level": 30,
523                "level_name": "INTERNAL_ACTION",
524                "name": "audit_item_status",
525                "path": "/human-donors/IGVFDO3628ZBBZ/"
526            },
527            {
528                "category": "mismatched status",
529                "detail": "Preview human donor [IGVFDO3628ZBBZ](/human-donors/IGVFDO3628ZBBZ/) has in progress subobject phenotypic feature [0a57d072-d2db-41b5-bc20-8d466b3599c9](/phenotypic-features/0a57d072-d2db-41b5-bc20-8d466b3599c9/).",
530                "level": 30,
531                "level_name": "INTERNAL_ACTION",
532                "name": "audit_item_status",
533                "path": "/human-donors/IGVFDO3628ZBBZ/"
534            },
535            {
536                "category": "mismatched status",
537                "detail": "Preview human donor [IGVFDO3628ZBBZ](/human-donors/IGVFDO3628ZBBZ/) has in progress subobject phenotypic feature [2a28161e-ce79-47f7-a1f1-2828fd549e17](/phenotypic-features/2a28161e-ce79-47f7-a1f1-2828fd549e17/).",
538                "level": 30,
539                "level_name": "INTERNAL_ACTION",
540                "name": "audit_item_status",
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542            }
543        ],
544        "NOT_COMPLIANT": [
545            {
546                "category": "missing sequence specification",
547                "detail": "Measurement set [IGVFDS8965MWPW](/measurement-sets/IGVFDS8965MWPW/) has sequence file(s): [IGVFFI5866KKKR](/sequence-files/IGVFFI5866KKKR/), [IGVFFI4995UNXW](/sequence-files/IGVFFI4995UNXW/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
548                "level": 50,
549                "level_name": "NOT_COMPLIANT",
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551                "path": "/measurement-sets/IGVFDS8965MWPW/"
552            }
553        ],
554        "WARNING": [
555            {
556                "category": "missing analysis",
557                "detail": "Measurement set [IGVFDS8965MWPW](/measurement-sets/IGVFDS8965MWPW/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
558                "level": 40,
559                "level_name": "WARNING",
560                "name": "audit_input_for",
561                "path": "/measurement-sets/IGVFDS8965MWPW/"
562            }
563        ]
564    },
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568        "contact_pi": {
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570            "title": "Ansuman Satpathy"
571        },
572        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
573    },
574    "control_for": [],
575    "controlled_access": false,
576    "creation_timestamp": "2025-03-19T19:59:54.130454+00:00",
577    "data_use_limitation_summaries": [
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579    ],
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600        },
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630        },
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776                "Sample",
777                "Item"
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780            "aliases": [
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783            "classifications": [
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785                "multiplexed sample"
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790                    "status": "in progress",
791                    "term_name": "mild cognitive impairment"
792                },
793                {
794                    "@id": "/phenotype-terms/DOID_14330/",
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797                },
798                {
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816                    "@type": [
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818                        "OntologyTerm",
819                        "Item"
820                    ],
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822                    "summary": "putamen",
823                    "term_name": "putamen"
824                },
825                {
826                    "@id": "/sample-terms/UBERON_0002129/",
827                    "@type": [
828                        "SampleTerm",
829                        "OntologyTerm",
830                        "Item"
831                    ],
832                    "status": "preview",
833                    "summary": "cerebellar cortex",
834                    "term_name": "cerebellar cortex"
835                },
836                {
837                    "@id": "/sample-terms/UBERON_0002740/",
838                    "@type": [
839                        "SampleTerm",
840                        "OntologyTerm",
841                        "Item"
842                    ],
843                    "status": "preview",
844                    "summary": "posterior cingulate gyrus",
845                    "term_name": "posterior cingulate gyrus"
846                },
847                {
848                    "@id": "/sample-terms/UBERON_0002771/",
849                    "@type": [
850                        "SampleTerm",
851                        "OntologyTerm",
852                        "Item"
853                    ],
854                    "status": "preview",
855                    "summary": "middle temporal gyrus",
856                    "term_name": "middle temporal gyrus"
857                }
858            ],
859            "status": "preview",
860            "summary": "multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples",
861            "taxa": "Homo sapiens",
862            "treatments": []
863        }
864    ],
865    "schema_version": "26",
866    "status": "preview",
867    "submitted_by": {
868        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
869        "title": "Ryan Corces"
870    },
871    "submitted_files_timestamp": "2025-03-20T00:41:32.474080+00:00",
872    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
873    "uuid": "de67ab0c-71bf-4b81-a158-e447b23d14f6"
874}