{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8938MFTZ",
"aliases": [
"bradley-bernstein:scATAC Lib 5",
"buenrostro-bernstein:scATAC Lib 5"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8938MFTZ](/measurement-sets/IGVFDS8938MFTZ/) has sequence file(s): [IGVFFI5464FGXS](/sequence-files/IGVFFI5464FGXS/), [IGVFFI8221VFKO](/sequence-files/IGVFFI8221VFKO/), [IGVFFI5524JBHE](/sequence-files/IGVFFI5524JBHE/), [IGVFFI3214UMBS](/sequence-files/IGVFFI3214UMBS/), [IGVFFI4870YIUH](/sequence-files/IGVFFI4870YIUH/), [IGVFFI5707ZXAA](/sequence-files/IGVFFI5707ZXAA/), [IGVFFI5015XTEQ](/sequence-files/IGVFFI5015XTEQ/), [IGVFFI4963CCPQ](/sequence-files/IGVFFI4963CCPQ/), [IGVFFI4589LANI](/sequence-files/IGVFFI4589LANI/), [IGVFFI3001FIYK](/sequence-files/IGVFFI3001FIYK/), [IGVFFI5040DTDV](/sequence-files/IGVFFI5040DTDV/), [IGVFFI8405TYBH](/sequence-files/IGVFFI8405TYBH/), [IGVFFI4467JEMT](/sequence-files/IGVFFI4467JEMT/), [IGVFFI0322TNPU](/sequence-files/IGVFFI0322TNPU/), [IGVFFI0233JOEQ](/sequence-files/IGVFFI0233JOEQ/), [IGVFFI9647ZOWN](/sequence-files/IGVFFI9647ZOWN/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8938MFTZ/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8523CFBV](/primary-cells/IGVFSM8523CFBV/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8523CFBV/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8938MFTZ](/measurement-sets/IGVFDS8938MFTZ/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8938MFTZ/"
}
]
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},
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"bradley-bernstein:BioSam 4567_SS-PKR 1",
"buenrostro-bernstein:BioSam 4567_SS-PKR 1"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:26.775294+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9303848a-dcf7-4f6d-917e-78511d9b3f10"
}