{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8905OYNA",
"aliases": [
"bradley-bernstein:scATAC Lib 15",
"buenrostro-bernstein:scATAC Lib 15"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0637JXAI](/primary-cells/IGVFSM0637JXAI/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0637JXAI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8905OYNA](/measurement-sets/IGVFDS8905OYNA/) has sequence file(s): [IGVFFI8760RBLJ](/sequence-files/IGVFFI8760RBLJ/), [IGVFFI0918IQRU](/sequence-files/IGVFFI0918IQRU/), [IGVFFI3253NPPA](/sequence-files/IGVFFI3253NPPA/), [IGVFFI4690ZYDH](/sequence-files/IGVFFI4690ZYDH/), [IGVFFI5726UUXP](/sequence-files/IGVFFI5726UUXP/), [IGVFFI5971EUEF](/sequence-files/IGVFFI5971EUEF/), [IGVFFI9868HXHC](/sequence-files/IGVFFI9868HXHC/), [IGVFFI5645HUQZ](/sequence-files/IGVFFI5645HUQZ/), [IGVFFI0905FSXO](/sequence-files/IGVFFI0905FSXO/), [IGVFFI8847OHXE](/sequence-files/IGVFFI8847OHXE/), [IGVFFI0629DIEJ](/sequence-files/IGVFFI0629DIEJ/), [IGVFFI2096SLIH](/sequence-files/IGVFFI2096SLIH/), [IGVFFI4458DLYD](/sequence-files/IGVFFI4458DLYD/), [IGVFFI4150KVFC](/sequence-files/IGVFFI4150KVFC/), [IGVFFI1317SOTA](/sequence-files/IGVFFI1317SOTA/), [IGVFFI0152GXQL](/sequence-files/IGVFFI0152GXQL/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8905OYNA/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8905OYNA](/measurement-sets/IGVFDS8905OYNA/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8905OYNA/"
}
]
},
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},
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},
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"buenrostro-bernstein:BioSam 4565_SS-PKR 3"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:33.962734+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9725e809-633c-46b5-a7ab-aee5cad39b24"
}