{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8815ZJNW/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8815ZJNW",
"aliases": [
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],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS8815ZJNW](/measurement-sets/IGVFDS8815ZJNW/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS8815ZJNW/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8815ZJNW](/measurement-sets/IGVFDS8815ZJNW/) has in progress subobject tabular file [IGVFFI5522PXUM](/tabular-files/IGVFFI5522PXUM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8815ZJNW/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8815ZJNW](/measurement-sets/IGVFDS8815ZJNW/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8815ZJNW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0270BBYP](/in-vitro-systems/IGVFSM0270BBYP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0270BBYP/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS8815ZJNW](/measurement-sets/IGVFDS8815ZJNW/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS8815ZJNW/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:56:33.936892+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO4222QOSB/",
"accession": "IGVFDO4222QOSB",
"aliases": [
"buenrostro-bernstein:Donor 1827"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1535CIEE/",
"accession": "IGVFDO1535CIEE",
"aliases": [
"buenrostro-bernstein:Donor 1793"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2298PENP/",
"accession": "IGVFDO2298PENP",
"aliases": [
"buenrostro-bernstein:Donor 1879"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7983CLUG/",
"accession": "IGVFDO7983CLUG",
"aliases": [
"buenrostro-bernstein:Donor 1852"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4197GLLD/",
"accession": "IGVFDO4197GLLD",
"aliases": [
"buenrostro-bernstein:Donor 1866"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5748WCDL/",
"accession": "IGVFDO5748WCDL",
"aliases": [
"buenrostro-bernstein:Donor 1889"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2372UULO/",
"accession": "IGVFDO2372UULO",
"aliases": [
"buenrostro-bernstein:Donor 1840"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0597VIVH/",
"accession": "IGVFDO0597VIVH",
"aliases": [
"buenrostro-bernstein:Donor 1874"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4689NFPC/",
"accession": "IGVFDO4689NFPC",
"aliases": [
"buenrostro-bernstein:Donor 1770"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8404YTWG/",
"accession": "IGVFDO8404YTWG",
"aliases": [
"buenrostro-bernstein:Donor 1865"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9402EPTG/",
"accession": "IGVFDO9402EPTG",
"aliases": [
"buenrostro-bernstein:Donor 1829"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0233FJJF/",
"accession": "IGVFDO0233FJJF",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6626TJEC/",
"accession": "IGVFDO6626TJEC",
"aliases": [
"buenrostro-bernstein:Donor 1888"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3364ORGK/",
"accession": "IGVFDO3364ORGK",
"aliases": [
"buenrostro-bernstein:Donor 1897"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6694QTLS/",
"accession": "IGVFDO6694QTLS",
"aliases": [
"buenrostro-bernstein:Donor 1826"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6675DJLJ/",
"accession": "IGVFDO6675DJLJ",
"aliases": [
"buenrostro-bernstein:Donor 1837"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2796VIEN/",
"accession": "IGVFDO2796VIEN",
"aliases": [
"buenrostro-bernstein:Donor 1884"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0166JLWT/",
"accession": "IGVFDO0166JLWT",
"aliases": [
"buenrostro-bernstein:Donor 1816"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7476FWEA/",
"accession": "IGVFDO7476FWEA",
"aliases": [
"buenrostro-bernstein:Donor 1851"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5895ABMM/",
"accession": "IGVFDO5895ABMM",
"aliases": [
"buenrostro-bernstein:Donor 1824"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0143YSWQ/",
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"aliases": [
"buenrostro-bernstein:Donor 1860"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6969ZGNB/",
"accession": "IGVFDO6969ZGNB",
"aliases": [
"buenrostro-bernstein:Donor 1844"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0875HNRV/",
"accession": "IGVFDO0875HNRV",
"aliases": [
"buenrostro-bernstein:Donor 1895"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2131TKFT/",
"accession": "IGVFDO2131TKFT",
"aliases": [
"buenrostro-bernstein:Donor 1811"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5342CGKC/",
"accession": "IGVFDO5342CGKC",
"aliases": [
"buenrostro-bernstein:Donor 1882"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1165TQMX/",
"accession": "IGVFDO1165TQMX",
"aliases": [
"buenrostro-bernstein:Donor 1887"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1906JPPE/",
"accession": "IGVFDO1906JPPE",
"aliases": [
"buenrostro-bernstein:Donor 1893"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6295KHUE/",
"accession": "IGVFDO6295KHUE",
"aliases": [
"buenrostro-bernstein:Donor 1863"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5446TLJJ/",
"accession": "IGVFDO5446TLJJ",
"aliases": [
"buenrostro-bernstein:Donor 1894"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3937NOVL/",
"accession": "IGVFDO3937NOVL",
"aliases": [
"buenrostro-bernstein:Donor 1858"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9707NUOC/",
"accession": "IGVFDO9707NUOC",
"aliases": [
"buenrostro-bernstein:Donor 1859"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6556DSRS/",
"accession": "IGVFDO6556DSRS",
"aliases": [
"buenrostro-bernstein:Donor 1848"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6673DKZI/",
"accession": "IGVFDO6673DKZI",
"aliases": [
"buenrostro-bernstein:Donor 1880"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9594EWNE/",
"accession": "IGVFDO9594EWNE",
"aliases": [
"buenrostro-bernstein:Donor 1878"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2343ZVKW/",
"accession": "IGVFDO2343ZVKW",
"aliases": [
"buenrostro-bernstein:Donor 1869"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0995XOJH/",
"accession": "IGVFDO0995XOJH",
"aliases": [
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4141QBHD/",
"accession": "IGVFDO4141QBHD",
"aliases": [
"buenrostro-bernstein:Donor 1883"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3184WKWK/",
"accession": "IGVFDO3184WKWK",
"aliases": [
"buenrostro-bernstein:Donor 1861"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4451SLQW/",
"accession": "IGVFDO4451SLQW",
"aliases": [
"buenrostro-bernstein:Donor 1789"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8250RHCQ/",
"accession": "IGVFDO8250RHCQ",
"aliases": [
"buenrostro-bernstein:Donor 1854"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0144AKUR/",
"accession": "IGVFDO0144AKUR",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4620JPIG/",
"accession": "IGVFDO4620JPIG",
"aliases": [
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3170VPEQ/",
"accession": "IGVFDO3170VPEQ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7567RWAK/",
"accession": "IGVFDO7567RWAK",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4379UQON/",
"accession": "IGVFDO4379UQON",
"aliases": [
"buenrostro-bernstein:Donor 1842"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2015BBZM/",
"accession": "IGVFDO2015BBZM",
"aliases": [
"buenrostro-bernstein:Donor 1813"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5074GHND/",
"accession": "IGVFDO5074GHND",
"aliases": [
"buenrostro-bernstein:Donor 1890"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1429GCHH/",
"accession": "IGVFDO1429GCHH",
"aliases": [
"buenrostro-bernstein:Donor 1810"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0452ROLO/",
"accession": "IGVFDO0452ROLO",
"aliases": [
"buenrostro-bernstein:Donor 1867"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2628QOSP/",
"accession": "IGVFDO2628QOSP",
"aliases": [
"buenrostro-bernstein:Donor 1830"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7817ENDD/",
"accession": "IGVFDO7817ENDD",
"aliases": [
"buenrostro-bernstein:Donor 1877"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5333XVCI/",
"accession": "IGVFDO5333XVCI",
"aliases": [
"buenrostro-bernstein:Donor 1818"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
"buenrostro-bernstein:Donor 1744"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7542OMCX/",
"accession": "IGVFDO7542OMCX",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6837BSOS/",
"accession": "IGVFDO6837BSOS",
"aliases": [
"buenrostro-bernstein:Donor 1812"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3707NTZB/",
"accession": "IGVFDO3707NTZB",
"aliases": [
"buenrostro-bernstein:Donor 1853"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316KUFG/",
"accession": "IGVFDO6316KUFG",
"aliases": [
"buenrostro-bernstein:Donor 1871"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0674VHCY/",
"accession": "IGVFDO0674VHCY",
"aliases": [
"buenrostro-bernstein:Donor 1896"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1502TPVD/",
"accession": "IGVFDO1502TPVD",
"aliases": [
"buenrostro-bernstein:Donor 1849"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6180JBWH/",
"accession": "IGVFDO6180JBWH",
"aliases": [
"buenrostro-bernstein:Donor 1855"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1215CYXN/",
"accession": "IGVFDO1215CYXN",
"aliases": [
"buenrostro-bernstein:Donor 1843"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5257YVJL/",
"accession": "IGVFDO5257YVJL",
"aliases": [
"buenrostro-bernstein:Donor 1825"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8532BOID/",
"accession": "IGVFDO8532BOID",
"aliases": [
"buenrostro-bernstein:Donor 1823"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9737GFZX/",
"accession": "IGVFDO9737GFZX",
"aliases": [
"buenrostro-bernstein:Donor 1839"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0455AULY/",
"accession": "IGVFDO0455AULY",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GKJS/",
"accession": "IGVFDO6890GKJS",
"aliases": [
"buenrostro-bernstein:Donor 1836"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6328ESSA/",
"accession": "IGVFDO6328ESSA",
"aliases": [
"buenrostro-bernstein:Donor 1768"
],
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{
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},
{
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},
{
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{
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"certificate_identifier": "IP113-17",
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"status": "released"
},
{
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"certificate_identifier": "IP113-18",
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{
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"certificate_identifier": "IP113-19",
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},
{
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"certificate_identifier": "IP113-20",
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
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"summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 178)",
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"status": "released",
"term_name": "hepatic oval stem cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:23:27.216883+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "224459a8-235f-43ef-9769-710558ed192f"
}