IGVFDS8726KDVX

released
GRU
1{
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7        "Item"
8    ],
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10    "aliases": [
11        "buenrostro-bernstein:scATAC Lib 403"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS8726KDVX](/measurement-sets/IGVFDS8726KDVX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS8726KDVX/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS8726KDVX](/measurement-sets/IGVFDS8726KDVX/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS8726KDVX/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS8726KDVX](/measurement-sets/IGVFDS8726KDVX/) has in progress subobject tabular file [IGVFFI5586QIXE](/tabular-files/IGVFFI5586QIXE/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS8726KDVX/"
46            },
47            {
48                "category": "missing publication",
49                "detail": "In vitro system [IGVFSM2760XEJI](/in-vitro-systems/IGVFSM2760XEJI/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_sample_missing_publication",
53                "path": "/in-vitro-systems/IGVFSM2760XEJI/"
54            }
55        ]
56    },
57    "award": {
58        "@id": "/awards/HG011986/",
59        "component": "mapping",
60        "contact_pi": {
61            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
62            "title": "Jason Buenrostro"
63        },
64        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
65    },
66    "control_for": [],
67    "controlled_access": true,
68    "creation_timestamp": "2024-08-20T15:00:30.616653+00:00",
69    "data_use_limitation_summaries": [
70        "GRU"
71    ],
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97                "buenrostro-bernstein:Donor 1737"
98            ],
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103        {
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112        },
113        {
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117                "buenrostro-bernstein:Donor 1700"
118            ],
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122        },
123        {
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125            "accession": "IGVFDO4723DYAE",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1660"
128            ],
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143        {
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148            ],
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152        },
153        {
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155            "accession": "IGVFDO0673LUEU",
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158            ],
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160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
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202        },
203        {
204            "@id": "/human-donors/IGVFDO9506VMLU/",
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207                "buenrostro-bernstein:Donor 1662"
208            ],
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212        },
213        {
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218            ],
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222        },
223        {
224            "@id": "/human-donors/IGVFDO1173NZNR/",
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227                "buenrostro-bernstein:Donor 1725"
228            ],
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231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO9010UZXK/",
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236            "aliases": [
237                "buenrostro-bernstein:Donor 1731"
238            ],
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241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO0188QZTI/",
245            "accession": "IGVFDO0188QZTI",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1735"
248            ],
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251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO9752KKXF/",
255            "accession": "IGVFDO9752KKXF",
256            "aliases": [
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311            "taxa": "Homo sapiens"
312        },
313        {
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324            "@id": "/human-donors/IGVFDO1009JNIM/",
325            "accession": "IGVFDO1009JNIM",
326            "aliases": [
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330            "status": "released",
331            "taxa": "Homo sapiens"
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333        {
334            "@id": "/human-donors/IGVFDO0533MSQJ/",
335            "accession": "IGVFDO0533MSQJ",
336            "aliases": [
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338            ],
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340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO7268VSSU/",
345            "accession": "IGVFDO7268VSSU",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1726"
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350            "status": "released",
351            "taxa": "Homo sapiens"
352        },
353        {
354            "@id": "/human-donors/IGVFDO5614SKSA/",
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361            "taxa": "Homo sapiens"
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430            "status": "released",
431            "taxa": "Homo sapiens"
432        },
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441            "taxa": "Homo sapiens"
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471            "taxa": "Homo sapiens"
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478            ],
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481            "taxa": "Homo sapiens"
482        },
483        {
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488            ],
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491            "taxa": "Homo sapiens"
492        },
493        {
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501            "taxa": "Homo sapiens"
502        },
503        {
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508            ],
509            "sex": "unspecified",
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511            "taxa": "Homo sapiens"
512        },
513        {
514            "@id": "/human-donors/IGVFDO9375TNMP/",
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518            ],
519            "sex": "unspecified",
520            "status": "released",
521            "taxa": "Homo sapiens"
522        },
523        {
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528            ],
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530            "status": "released",
531            "taxa": "Homo sapiens"
532        },
533        {
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541            "taxa": "Homo sapiens"
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548            ],
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551            "taxa": "Homo sapiens"
552        },
553        {
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561            "taxa": "Homo sapiens"
562        },
563        {
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568            ],
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571            "taxa": "Homo sapiens"
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573        {
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581            "taxa": "Homo sapiens"
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591            "taxa": "Homo sapiens"
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597                "buenrostro-bernstein:Donor 1732"
598            ],
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601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO4062HKSZ/",
605            "accession": "IGVFDO4062HKSZ",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1695"
608            ],
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610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO8623DFZV/",
615            "accession": "IGVFDO8623DFZV",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1689"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO0823IGCQ/",
625            "accession": "IGVFDO0823IGCQ",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1694"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO4376OYXM/",
635            "accession": "IGVFDO4376OYXM",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1669"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO2649JQXX/",
645            "accession": "IGVFDO2649JQXX",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1659"
648            ],
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1844        },
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1860            "upload_status": "validated"
1861        },
1862        {
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1864            "accession": "IGVFFI5042SCXH",
1865            "aliases": [
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1877            "upload_status": "validated"
1878        },
1879        {
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1881            "accession": "IGVFFI0326PTRY",
1882            "aliases": [
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1893            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI4030FLYS_seqspec.yaml.gz",
1894            "upload_status": "validated"
1895        },
1896        {
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1898            "accession": "IGVFFI8417QDRZ",
1899            "aliases": [
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1911            "upload_status": "validated"
1912        }
1913    ],
1914    "input_for": [
1915        "/analysis-sets/IGVFDS2683OTBH/"
1916    ],
1917    "lab": {
1918        "@id": "/labs/jason-buenrostro/",
1919        "title": "Jason Buenrostro, Broad"
1920    },
1921    "multiome_size": 2,
1922    "onlist_files": [
1923        "/tabular-files/IGVFFI5586QIXE/",
1924        "/tabular-files/IGVFFI0400MBIM/"
1925    ],
1926    "onlist_method": "product",
1927    "preferred_assay_title": "SHARE-seq",
1928    "protocols": [
1929        "https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
1930    ],
1931    "related_multiome_datasets": [
1932        {
1933            "@id": "/measurement-sets/IGVFDS7401DCSO/",
1934            "accession": "IGVFDS7401DCSO",
1935            "status": "released"
1936        }
1937    ],
1938    "release_timestamp": "2025-04-22T04:09:03.634487+00:00",
1939    "samples": [
1940        {
1941            "@id": "/in-vitro-systems/IGVFSM2760XEJI/",
1942            "@type": [
1943                "InVitroSystem",
1944                "Biosample",
1945                "Sample",
1946                "Item"
1947            ],
1948            "accession": "IGVFSM2760XEJI",
1949            "aliases": [
1950                "buenrostro-bernstein:BioSam 4885_SS-PKR 173"
1951            ],
1952            "cellular_sub_pool": "SS-PKR 173",
1953            "classifications": [
1954                "pooled cell specimen",
1955                "differentiated cell specimen"
1956            ],
1957            "institutional_certificates": [
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1961                    "controlled_access": true,
1962                    "data_use_limitation": "GRU",
1963                    "status": "released"
1964                },
1965                {
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1967                    "certificate_identifier": "IP113-02",
1968                    "controlled_access": true,
1969                    "data_use_limitation": "GRU",
1970                    "status": "released"
1971                },
1972                {
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1974                    "certificate_identifier": "IP113-03",
1975                    "controlled_access": true,
1976                    "data_use_limitation": "GRU",
1977                    "status": "released"
1978                },
1979                {
1980                    "@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
1981                    "certificate_identifier": "IP113-04",
1982                    "controlled_access": true,
1983                    "data_use_limitation": "GRU",
1984                    "status": "released"
1985                },
1986                {
1987                    "@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
1988                    "certificate_identifier": "IP113-05",
1989                    "controlled_access": true,
1990                    "data_use_limitation": "GRU",
1991                    "status": "released"
1992                },
1993                {
1994                    "@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
1995                    "certificate_identifier": "IP113-06",
1996                    "controlled_access": true,
1997                    "data_use_limitation": "GRU",
1998                    "status": "released"
1999                },
2000                {
2001                    "@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
2002                    "certificate_identifier": "IP113-07",
2003                    "controlled_access": true,
2004                    "data_use_limitation": "GRU",
2005                    "status": "released"
2006                },
2007                {
2008                    "@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
2009                    "certificate_identifier": "IP113-08",
2010                    "controlled_access": true,
2011                    "data_use_limitation": "GRU",
2012                    "status": "released"
2013                },
2014                {
2015                    "@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
2016                    "certificate_identifier": "IP113-09",
2017                    "controlled_access": true,
2018                    "data_use_limitation": "GRU",
2019                    "status": "released"
2020                },
2021                {
2022                    "@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
2023                    "certificate_identifier": "IP113-10",
2024                    "controlled_access": true,
2025                    "data_use_limitation": "GRU",
2026                    "status": "released"
2027                },
2028                {
2029                    "@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
2030                    "certificate_identifier": "IP113-11",
2031                    "controlled_access": true,
2032                    "data_use_limitation": "GRU",
2033                    "status": "released"
2034                },
2035                {
2036                    "@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
2037                    "certificate_identifier": "IP113-15",
2038                    "controlled_access": true,
2039                    "data_use_limitation": "GRU",
2040                    "status": "released"
2041                },
2042                {
2043                    "@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
2044                    "certificate_identifier": "IP113-12",
2045                    "controlled_access": true,
2046                    "data_use_limitation": "GRU",
2047                    "status": "released"
2048                },
2049                {
2050                    "@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
2051                    "certificate_identifier": "IP113-13",
2052                    "controlled_access": true,
2053                    "data_use_limitation": "GRU",
2054                    "status": "released"
2055                },
2056                {
2057                    "@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
2058                    "certificate_identifier": "IP113-14",
2059                    "controlled_access": true,
2060                    "data_use_limitation": "GRU",
2061                    "status": "released"
2062                },
2063                {
2064                    "@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
2065                    "certificate_identifier": "IP113-16",
2066                    "controlled_access": true,
2067                    "data_use_limitation": "GRU",
2068                    "status": "released"
2069                },
2070                {
2071                    "@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
2072                    "certificate_identifier": "IP113-18",
2073                    "controlled_access": true,
2074                    "data_use_limitation": "GRU",
2075                    "status": "released"
2076                },
2077                {
2078                    "@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
2079                    "certificate_identifier": "IP113-17",
2080                    "controlled_access": true,
2081                    "data_use_limitation": "GRU",
2082                    "status": "released"
2083                },
2084                {
2085                    "@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
2086                    "certificate_identifier": "IP113-19",
2087                    "controlled_access": true,
2088                    "data_use_limitation": "GRU",
2089                    "status": "released"
2090                },
2091                {
2092                    "@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
2093                    "certificate_identifier": "IP113-20",
2094                    "controlled_access": true,
2095                    "data_use_limitation": "GRU",
2096                    "status": "released"
2097                }
2098            ],
2099            "sample_terms": [
2100                {
2101                    "@id": "/sample-terms/EFO_0004905/",
2102                    "@type": [
2103                        "SampleTerm",
2104                        "OntologyTerm",
2105                        "Item"
2106                    ],
2107                    "status": "released",
2108                    "summary": "induced pluripotent stem cell",
2109                    "term_name": "induced pluripotent stem cell"
2110                }
2111            ],
2112            "status": "released",
2113            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 173)",
2114            "targeted_sample_term": {
2115                "@id": "/sample-terms/CL_0011020/",
2116                "status": "released",
2117                "term_name": "neural progenitor cell"
2118            },
2119            "taxa": "Homo sapiens"
2120        }
2121    ],
2122    "schema_version": "26",
2123    "status": "released",
2124    "submitted_by": {
2125        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2126        "title": "Siddarth Wekhande"
2127    },
2128    "submitted_files_timestamp": "2024-08-20T15:21:07.472425+00:00",
2129    "summary": "single-cell ATAC-seq (SHARE-seq)",
2130    "uuid": "16a09ffa-73a2-4c71-b79f-57f565e253f0"
2131}