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IGVFDS8684IGUT

released
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Description
Colitis_chronic DSS05-DSS-m1,DSS05-DSS-m2; Control DSS05-Control-m3,DSS05-Control-m4
Assay Term
single-cell RNA sequencing assay
Sample Summaries
  • Mus musculus C57BL/6J colon cell
Protocols
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set16
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
I1
2
Barcode index
856 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
2
Read 1
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
2
Read 2
1.3 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Donors

4 items
Aliases
  • buenrostro-bernstein:surya-DSS05-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS05-Control-m4
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS05-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS05-DSS-m1
unspecified
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

5 items
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set5
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set4
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set17
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set18
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set6
Jason Buenrostro, Broad