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IGVFDS8678BJVO
IGVFDS8678BJVO
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP018_G5_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0441TUWW
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
4
578 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0641PVUK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
2
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0766TTDW
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
3
581 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0796TJUK
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
3
4.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1412QPAP
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
2
4.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2022KCNQ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
1
4.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2432OIBL
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
4
580 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2467JGRQ
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
2
588 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2636YZWR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
3
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3020ZAZJ
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
3
581 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7137MKTX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4812DEVH
igvf:corces_donor_BANN1833
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3423DTHY
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP018_G5_ATAC
Ryan Corces, Gladstone Institute UCSF