Home
Home
Search (⌘K or ⌃K)
Data
Resources / Standards
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS8664VJYP
IGVFDS8664VJYP
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 171)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 389
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
45 items
1
2
3
4
5
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0073POQI
fastq
reads
R2
8531
Read 2
IGVFFI3741PAMB
Illumina NovaSeq X
22LMVNLT4
2.5 MB
Jason Buenrostro, Broad
validated
IGVFFI0089USBA
fastq
reads
I1
919
Barcode index
IGVFFI6992SHAU
Illumina NovaSeq X
22773CLT3
102 MB
Jason Buenrostro, Broad
validated
IGVFFI0150PXKY
fastq
reads
R2
961
Read 2
IGVFFI6313FACA
Illumina NovaSeq X
22773CLT3
117 MB
Jason Buenrostro, Broad
validated
IGVFFI0270KPBR
fastq
reads
R1
9107
Read 1
IGVFFI3131KADO
Illumina NovaSeq X
22LMVNLT4
2.4 MB
Jason Buenrostro, Broad
validated
IGVFFI0561XZDW
fastq
reads
R1
8723
Read 1
IGVFFI6529SVIV
Illumina NovaSeq X
22LMVNLT4
2.6 MB
Jason Buenrostro, Broad
validated
IGVFFI0717APGI
fastq
reads
I1
8819
Barcode index
IGVFFI0502FRVI
Illumina NovaSeq X
22LMVNLT4
1.5 MB
Jason Buenrostro, Broad
validated
IGVFFI1246EQUN
fastq
reads
R2
8627
Read 2
IGVFFI3430LQUH
Illumina NovaSeq X
22LMVNLT4
2.6 MB
Jason Buenrostro, Broad
validated
IGVFFI2136WVLN
fastq
reads
R2
8819
Read 2
IGVFFI0502FRVI
Illumina NovaSeq X
22LMVNLT4
2.5 MB
Jason Buenrostro, Broad
validated
IGVFFI2153TQMJ
fastq
reads
R1
4083
Read 1
IGVFFI5223TXXT
Illumina NovaSeq X
22523KLT3
1.8 GB
Jason Buenrostro, Broad
validated
IGVFFI2454CPKY
fastq
reads
R2
9011
Read 2
IGVFFI0410HCVY
Illumina NovaSeq X
22LMVNLT4
2.5 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0517GAWB
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 171)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0412JTFG
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 416
Jason Buenrostro, Broad