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INDEXED
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MeasurementSet
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IGVFDS8645IDXO
IGVFDS8645IDXO
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
bradley-bernstein:scATAC Lib 117
buenrostro-bernstein:scATAC Lib 117
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0716KABP
fastq
reads
R1
171
Read 1
IGVFFI9449ARSM
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2873EEMS
fastq
reads
R2
171
Read 2, Barcode index
IGVFFI9449ARSM
Illumina NovaSeq 6000
2.0 GB
Jason Buenrostro, Broad
validated
IGVFFI5827ESIJ
fastq
reads
R2
170
Read 2, Barcode index
IGVFFI5074EAGI
Illumina NovaSeq 6000
2.0 GB
Jason Buenrostro, Broad
validated
IGVFFI7093KEGU
fastq
reads
R1
170
Read 1
IGVFFI5074EAGI
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9781HISX
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1318PLKS
bradley-bernstein:Donor 1503
buenrostro-bernstein:Donor 1503
female
Mus musculus
Related Multiome Datasets
5 items
Accession
Type
Summary
Aliases
Lab
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MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 116
buenrostro-bernstein:scATAC Lib 116
Jason Buenrostro, Broad
IGVFDS4464LQXA
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 126
buenrostro-bernstein:scRNA Lib 126
Jason Buenrostro, Broad
IGVFDS7709QUBW
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 125
buenrostro-bernstein:scRNA Lib 125
Jason Buenrostro, Broad
IGVFDS8248GGOY
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 124
buenrostro-bernstein:scRNA Lib 124
Jason Buenrostro, Broad
IGVFDS8528TQHC
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 115
buenrostro-bernstein:scATAC Lib 115
Jason Buenrostro, Broad
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad