IGVFDS8631OYNB

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS8631OYNB/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS8631OYNB",
10    "aliases": [
11        "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003661/",
15        "assay_slims": [
16            "CRISPR screens"
17        ],
18        "status": "released",
19        "term_name": "in vitro CRISPR screen using flow cytometry"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released in vitro system [IGVFSM9365FWZA](/in-vitro-systems/IGVFSM9365FWZA/) has in progress subobject construct library set [IGVFDS6982DESN](/construct-library-sets/IGVFDS6982DESN/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/in-vitro-systems/IGVFSM9365FWZA/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "In vitro system [IGVFSM9365FWZA](/in-vitro-systems/IGVFSM9365FWZA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_sample_missing_publication",
37                "path": "/in-vitro-systems/IGVFSM9365FWZA/"
38            },
39            {
40                "category": "missing publication",
41                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_file_set_missing_publication",
45                "path": "/measurement-sets/IGVFDS8631OYNB/"
46            },
47            {
48                "category": "missing sequencing kit",
49                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has sequence file(s) [IGVFFI5787ZTPB](/sequence-files/IGVFFI5787ZTPB/), [IGVFFI4966GLJV](/sequence-files/IGVFFI4966GLJV/), [IGVFFI9896OCBT](/sequence-files/IGVFFI9896OCBT/), [IGVFFI6145QVTF](/sequence-files/IGVFFI6145QVTF/), [IGVFFI8909NBYJ](/sequence-files/IGVFFI8909NBYJ/), [IGVFFI5146GUBO](/sequence-files/IGVFFI5146GUBO/), [IGVFFI9529AFQR](/sequence-files/IGVFFI9529AFQR/), [IGVFFI5549VPAI](/sequence-files/IGVFFI5549VPAI/), [IGVFFI2776JICU](/sequence-files/IGVFFI2776JICU/), [IGVFFI4603SNHG](/sequence-files/IGVFFI4603SNHG/), [IGVFFI7601HIPP](/sequence-files/IGVFFI7601HIPP/), [IGVFFI7986CYIT](/sequence-files/IGVFFI7986CYIT/), [IGVFFI0778UUQW](/sequence-files/IGVFFI0778UUQW/), [IGVFFI2957GFLE](/sequence-files/IGVFFI2957GFLE/), [IGVFFI4016PSHZ](/sequence-files/IGVFFI4016PSHZ/), [IGVFFI1022CALL](/sequence-files/IGVFFI1022CALL/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_inconsistent_sequencing_kit",
53                "path": "/measurement-sets/IGVFDS8631OYNB/"
54            },
55            {
56                "category": "missing sequence specification",
57                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has sequence file(s): [IGVFFI5787ZTPB](/sequence-files/IGVFFI5787ZTPB/), [IGVFFI4966GLJV](/sequence-files/IGVFFI4966GLJV/), [IGVFFI9896OCBT](/sequence-files/IGVFFI9896OCBT/), [IGVFFI6145QVTF](/sequence-files/IGVFFI6145QVTF/), [IGVFFI8909NBYJ](/sequence-files/IGVFFI8909NBYJ/), [IGVFFI5146GUBO](/sequence-files/IGVFFI5146GUBO/), [IGVFFI9529AFQR](/sequence-files/IGVFFI9529AFQR/), [IGVFFI5549VPAI](/sequence-files/IGVFFI5549VPAI/), [IGVFFI2776JICU](/sequence-files/IGVFFI2776JICU/), [IGVFFI4603SNHG](/sequence-files/IGVFFI4603SNHG/), [IGVFFI7601HIPP](/sequence-files/IGVFFI7601HIPP/), [IGVFFI7986CYIT](/sequence-files/IGVFFI7986CYIT/), [IGVFFI0778UUQW](/sequence-files/IGVFFI0778UUQW/), [IGVFFI2957GFLE](/sequence-files/IGVFFI2957GFLE/), [IGVFFI4016PSHZ](/sequence-files/IGVFFI4016PSHZ/), [IGVFFI1022CALL](/sequence-files/IGVFFI1022CALL/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_missing_seqspec",
61                "path": "/measurement-sets/IGVFDS8631OYNB/"
62            }
63        ],
64        "NOT_COMPLIANT": [
65            {
66                "category": "missing control for",
67                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has no `control_for`. The `control_file_sets` should be patched on the file sets it serves as a control for and this property, `control_for`, will be reverse calculated. File sets that specify a control type are expected to be a control for other file sets.",
68                "level": 50,
69                "level_name": "NOT_COMPLIANT",
70                "name": "audit_control_for_control_type",
71                "path": "/measurement-sets/IGVFDS8631OYNB/"
72            }
73        ],
74        "WARNING": [
75            {
76                "category": "missing auxiliary set",
77                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
78                "level": 40,
79                "level_name": "WARNING",
80                "name": "audit_missing_auxiliary_set",
81                "path": "/measurement-sets/IGVFDS8631OYNB/"
82            },
83            {
84                "category": "missing targeted genes",
85                "detail": "Measurement set [IGVFDS8631OYNB](/measurement-sets/IGVFDS8631OYNB/) has no `targeted_genes`. ChIP-seq and CRISPR flow cytometry assays are expected to specify targeted gene(s).",
86                "level": 40,
87                "level_name": "WARNING",
88                "name": "audit_targeted_genes",
89                "path": "/measurement-sets/IGVFDS8631OYNB/"
90            }
91        ]
92    },
93    "award": {
94        "@id": "/awards/HG011972/",
95        "component": "functional characterization",
96        "contact_pi": {
97            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
98            "title": "Jesse Engreitz"
99        },
100        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
101    },
102    "construct_library_sets": [
103        {
104            "@id": "/construct-library-sets/IGVFDS6982DESN/",
105            "accession": "IGVFDS6982DESN",
106            "file_set_type": "guide library",
107            "status": "in progress",
108            "summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
109        }
110    ],
111    "control_file_sets": [
112        {
113            "@id": "/measurement-sets/IGVFDS5864UGFT/",
114            "accession": "IGVFDS5864UGFT",
115            "aliases": [
116                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl_AmpliconSequencing"
117            ],
118            "status": "released"
119        }
120    ],
121    "control_for": [],
122    "control_type": "unsorted FACS input",
123    "creation_timestamp": "2023-11-30T22:49:58.112446+00:00",
124    "data_use_limitation_summaries": [
125        "no certificate"
126    ],
127    "donors": [
128        {
129            "@id": "/human-donors/IGVFDO7359LVPI/",
130            "accession": "IGVFDO7359LVPI",
131            "aliases": [
132                "igvf:donor_of_THP1"
133            ],
134            "sex": "male",
135            "status": "released",
136            "taxa": "Homo sapiens"
137        }
138    ],
139    "externally_hosted": false,
140    "file_set_type": "experimental data",
141    "files": [
142        {
143            "@id": "/sequence-files/IGVFFI5787ZTPB/",
144            "accession": "IGVFFI5787ZTPB",
145            "aliases": [
146                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep4_R1"
147            ],
148            "content_type": "reads",
149            "controlled_access": false,
150            "creation_timestamp": "2023-12-05T23:30:07.056749+00:00",
151            "file_format": "fastq",
152            "file_size": 4548183,
153            "href": "/sequence-files/IGVFFI5787ZTPB/@@download/IGVFFI5787ZTPB.fastq.gz",
154            "md5sum": "ca825d6d567cd3dc6b3fabc5f6c2538f",
155            "s3_uri": "s3://igvf-files/2023/12/05/3442735e-407f-4f84-b54a-19af337d6041/IGVFFI5787ZTPB.fastq.gz",
156            "sequencing_platform": {
157                "@id": "/platform-terms/EFO_0008566/",
158                "status": "released",
159                "term_name": "Illumina NextSeq 550"
160            },
161            "status": "released",
162            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep4_S417_R1_001.fastq.gz",
163            "upload_status": "validated"
164        },
165        {
166            "@id": "/sequence-files/IGVFFI4966GLJV/",
167            "accession": "IGVFFI4966GLJV",
168            "aliases": [
169                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep4_R2"
170            ],
171            "content_type": "reads",
172            "controlled_access": false,
173            "creation_timestamp": "2023-12-05T23:30:15.760927+00:00",
174            "file_format": "fastq",
175            "file_size": 5660473,
176            "href": "/sequence-files/IGVFFI4966GLJV/@@download/IGVFFI4966GLJV.fastq.gz",
177            "md5sum": "2471a2ab8e6c5eca377c4907ee4f0c9c",
178            "s3_uri": "s3://igvf-files/2023/12/05/4a8dfd54-4abd-4a6b-bb6e-b16a7b66ced8/IGVFFI4966GLJV.fastq.gz",
179            "sequencing_platform": {
180                "@id": "/platform-terms/EFO_0008566/",
181                "status": "released",
182                "term_name": "Illumina NextSeq 550"
183            },
184            "status": "released",
185            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep4_S417_R2_001.fastq.gz",
186            "upload_status": "validated"
187        },
188        {
189            "@id": "/sequence-files/IGVFFI9896OCBT/",
190            "accession": "IGVFFI9896OCBT",
191            "aliases": [
192                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep3_I1"
193            ],
194            "content_type": "reads",
195            "controlled_access": false,
196            "creation_timestamp": "2023-12-05T23:29:14.358483+00:00",
197            "file_format": "fastq",
198            "file_size": 1340148,
199            "href": "/sequence-files/IGVFFI9896OCBT/@@download/IGVFFI9896OCBT.fastq.gz",
200            "md5sum": "1c3a0ed464505937a81f9a61d269e172",
201            "s3_uri": "s3://igvf-files/2023/12/05/bd6c266a-0ff3-42f7-80ca-c341f0f32b20/IGVFFI9896OCBT.fastq.gz",
202            "sequencing_platform": {
203                "@id": "/platform-terms/EFO_0008566/",
204                "status": "released",
205                "term_name": "Illumina NextSeq 550"
206            },
207            "status": "released",
208            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep3_S408_I1_001.fastq.gz",
209            "upload_status": "validated"
210        },
211        {
212            "@id": "/sequence-files/IGVFFI6145QVTF/",
213            "accession": "IGVFFI6145QVTF",
214            "aliases": [
215                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep2_I2"
216            ],
217            "content_type": "reads",
218            "controlled_access": false,
219            "creation_timestamp": "2023-12-05T23:28:48.130291+00:00",
220            "file_format": "fastq",
221            "file_size": 1283200,
222            "href": "/sequence-files/IGVFFI6145QVTF/@@download/IGVFFI6145QVTF.fastq.gz",
223            "md5sum": "92b7e3a12416da741df527cf38a391c0",
224            "s3_uri": "s3://igvf-files/2023/12/05/da30ea6f-6d41-44ab-85f5-8ddf87eae56d/IGVFFI6145QVTF.fastq.gz",
225            "sequencing_platform": {
226                "@id": "/platform-terms/EFO_0008566/",
227                "status": "released",
228                "term_name": "Illumina NextSeq 550"
229            },
230            "status": "released",
231            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep2_S399_I2_001.fastq.gz",
232            "upload_status": "validated"
233        },
234        {
235            "@id": "/sequence-files/IGVFFI8909NBYJ/",
236            "accession": "IGVFFI8909NBYJ",
237            "aliases": [
238                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep3_I2"
239            ],
240            "content_type": "reads",
241            "controlled_access": false,
242            "creation_timestamp": "2023-12-05T23:29:23.034005+00:00",
243            "file_format": "fastq",
244            "file_size": 1316863,
245            "href": "/sequence-files/IGVFFI8909NBYJ/@@download/IGVFFI8909NBYJ.fastq.gz",
246            "md5sum": "be15b234083764d9ff4f5e12387100da",
247            "s3_uri": "s3://igvf-files/2023/12/05/94d03f7c-1018-43dc-922d-6fd528b21a5d/IGVFFI8909NBYJ.fastq.gz",
248            "sequencing_platform": {
249                "@id": "/platform-terms/EFO_0008566/",
250                "status": "released",
251                "term_name": "Illumina NextSeq 550"
252            },
253            "status": "released",
254            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep3_S408_I2_001.fastq.gz",
255            "upload_status": "validated"
256        },
257        {
258            "@id": "/sequence-files/IGVFFI5146GUBO/",
259            "accession": "IGVFFI5146GUBO",
260            "aliases": [
261                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep2_R1"
262            ],
263            "content_type": "reads",
264            "controlled_access": false,
265            "creation_timestamp": "2023-12-05T23:28:56.762603+00:00",
266            "file_format": "fastq",
267            "file_size": 4414643,
268            "href": "/sequence-files/IGVFFI5146GUBO/@@download/IGVFFI5146GUBO.fastq.gz",
269            "md5sum": "d6f3aaae89e92f6ec65c66eb3139466c",
270            "s3_uri": "s3://igvf-files/2023/12/05/aace24f9-1d20-44b8-b37a-0369d16dc22e/IGVFFI5146GUBO.fastq.gz",
271            "sequencing_platform": {
272                "@id": "/platform-terms/EFO_0008566/",
273                "status": "released",
274                "term_name": "Illumina NextSeq 550"
275            },
276            "status": "released",
277            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep2_S399_R1_001.fastq.gz",
278            "upload_status": "validated"
279        },
280        {
281            "@id": "/sequence-files/IGVFFI9529AFQR/",
282            "accession": "IGVFFI9529AFQR",
283            "aliases": [
284                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep2_I1"
285            ],
286            "content_type": "reads",
287            "controlled_access": false,
288            "creation_timestamp": "2023-12-05T23:28:39.308367+00:00",
289            "file_format": "fastq",
290            "file_size": 1315732,
291            "href": "/sequence-files/IGVFFI9529AFQR/@@download/IGVFFI9529AFQR.fastq.gz",
292            "md5sum": "349378e57ad5b871016c7a1924278387",
293            "s3_uri": "s3://igvf-files/2023/12/05/0e1d5d8b-392e-4614-9ed3-a21bc6b05e5c/IGVFFI9529AFQR.fastq.gz",
294            "sequencing_platform": {
295                "@id": "/platform-terms/EFO_0008566/",
296                "status": "released",
297                "term_name": "Illumina NextSeq 550"
298            },
299            "status": "released",
300            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep2_S399_I1_001.fastq.gz",
301            "upload_status": "validated"
302        },
303        {
304            "@id": "/sequence-files/IGVFFI5549VPAI/",
305            "accession": "IGVFFI5549VPAI",
306            "aliases": [
307                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep1_R1"
308            ],
309            "content_type": "reads",
310            "controlled_access": false,
311            "creation_timestamp": "2023-12-05T23:28:21.826903+00:00",
312            "file_format": "fastq",
313            "file_size": 4762956,
314            "href": "/sequence-files/IGVFFI5549VPAI/@@download/IGVFFI5549VPAI.fastq.gz",
315            "md5sum": "cfc4957b48d18587c6d903dd461960b4",
316            "s3_uri": "s3://igvf-files/2023/12/05/74853266-9ae2-40b5-b30a-2d3ad87fc154/IGVFFI5549VPAI.fastq.gz",
317            "sequencing_platform": {
318                "@id": "/platform-terms/EFO_0008566/",
319                "status": "released",
320                "term_name": "Illumina NextSeq 550"
321            },
322            "status": "released",
323            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep1_S390_R1_001.fastq.gz",
324            "upload_status": "validated"
325        },
326        {
327            "@id": "/sequence-files/IGVFFI2776JICU/",
328            "accession": "IGVFFI2776JICU",
329            "aliases": [
330                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep4_I2"
331            ],
332            "content_type": "reads",
333            "controlled_access": false,
334            "creation_timestamp": "2023-12-05T23:29:57.766884+00:00",
335            "file_format": "fastq",
336            "file_size": 1323728,
337            "href": "/sequence-files/IGVFFI2776JICU/@@download/IGVFFI2776JICU.fastq.gz",
338            "md5sum": "f6ad2dfbdb64d79cf3713ec8b3b63be3",
339            "s3_uri": "s3://igvf-files/2023/12/05/d52f58b1-afed-448c-87d3-2d7573b1e37d/IGVFFI2776JICU.fastq.gz",
340            "sequencing_platform": {
341                "@id": "/platform-terms/EFO_0008566/",
342                "status": "released",
343                "term_name": "Illumina NextSeq 550"
344            },
345            "status": "released",
346            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep4_S417_I2_001.fastq.gz",
347            "upload_status": "validated"
348        },
349        {
350            "@id": "/sequence-files/IGVFFI4603SNHG/",
351            "accession": "IGVFFI4603SNHG",
352            "aliases": [
353                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep3_R2"
354            ],
355            "content_type": "reads",
356            "controlled_access": false,
357            "creation_timestamp": "2023-12-05T23:29:40.384381+00:00",
358            "file_format": "fastq",
359            "file_size": 5695134,
360            "href": "/sequence-files/IGVFFI4603SNHG/@@download/IGVFFI4603SNHG.fastq.gz",
361            "md5sum": "4251ae5894b5be8688bdc84d7d57e085",
362            "s3_uri": "s3://igvf-files/2023/12/05/1a00dd46-f248-4055-8ac3-475e8110d889/IGVFFI4603SNHG.fastq.gz",
363            "sequencing_platform": {
364                "@id": "/platform-terms/EFO_0008566/",
365                "status": "released",
366                "term_name": "Illumina NextSeq 550"
367            },
368            "status": "released",
369            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep6-BinAll-PCRrep3_S408_R2_001.fastq.gz",
370            "upload_status": "validated"
371        },
372        {
373            "@id": "/sequence-files/IGVFFI7601HIPP/",
374            "accession": "IGVFFI7601HIPP",
375            "aliases": [
376                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep4_I1"
377            ],
378            "content_type": "reads",
379            "controlled_access": false,
380            "creation_timestamp": "2023-12-05T23:29:49.100638+00:00",
381            "file_format": "fastq",
382            "file_size": 1301943,
383            "href": "/sequence-files/IGVFFI7601HIPP/@@download/IGVFFI7601HIPP.fastq.gz",
384            "md5sum": "1851aae609e36cf64c10e085257d25a8",
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386            "sequencing_platform": {
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486        },
487        {
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489            "accession": "IGVFFI1022CALL",
490            "aliases": [
491                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input-PCRrep1_I1"
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510    ],
511    "input_for": [
512        "/analysis-sets/IGVFDS3423PSID/"
513    ],
514    "lab": {
515        "@id": "/labs/jesse-engreitz/",
516        "title": "Jesse Engreitz, Stanford"
517    },
518    "notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
519    "preferred_assay_title": "Variant-EFFECTS",
520    "protocols": [
521        "https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
522    ],
523    "release_timestamp": "2023-12-20T23:05:58.915287+00:00",
524    "samples": [
525        {
526            "@id": "/in-vitro-systems/IGVFSM9365FWZA/",
527            "@type": [
528                "InVitroSystem",
529                "Biosample",
530                "Sample",
531                "Item"
532            ],
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534            "aliases": [
535                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input"
536            ],
537            "classifications": [
538                "cell line"
539            ],
540            "institutional_certificates": [],
541            "modifications": [
542                {
543                    "@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
544                    "modality": "prime editing",
545                    "status": "released"
546                }
547            ],
548            "sample_terms": [
549                {
550                    "@id": "/sample-terms/EFO_0001253/",
551                    "@type": [
552                        "SampleTerm",
553                        "OntologyTerm",
554                        "Item"
555                    ],
556                    "aliases": [
557                        "igvf:THP-1"
558                    ],
559                    "status": "released",
560                    "summary": "THP-1",
561                    "term_name": "THP-1"
562                }
563            ],
564            "status": "released",
565            "summary": "Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
566            "taxa": "Homo sapiens"
567        }
568    ],
569    "schema_version": "26",
570    "status": "released",
571    "submitted_by": {
572        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
573        "title": "Michael Montgomery"
574    },
575    "submitted_files_timestamp": "2023-12-05T23:28:04.515307+00:00",
576    "summary": "unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
577    "uuid": "c394716c-b10b-4839-bf1d-9ce264d60ffd"
578}