{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8596SFBH/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8596SFBH",
"aliases": [
"ali-mortazavi:007_67E_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS8596SFBH](/measurement-sets/IGVFDS8596SFBH/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS8596SFBH/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8596SFBH](/measurement-sets/IGVFDS8596SFBH/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8596SFBH/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8596SFBH](/measurement-sets/IGVFDS8596SFBH/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8596SFBH/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM3256AAJO](/multiplexed-samples/IGVFSM3256AAJO/) has in progress subobject tabular file [IGVFFI4658LINI](/tabular-files/IGVFFI4658LINI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM3256AAJO/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM3256AAJO](/multiplexed-samples/IGVFSM3256AAJO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM3256AAJO/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-09T17:25:59.584610+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2517TXOT/",
"accession": "IGVFDO2517TXOT",
"aliases": [
"ali-mortazavi:092_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI8577YCTI/",
"accession": "IGVFFI8577YCTI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:53:50.160474+00:00",
"file_format": "fastq",
"file_size": 6478328570,
"href": "/sequence-files/IGVFFI8577YCTI/@@download/IGVFFI8577YCTI.fastq.gz",
"md5sum": "a42057f8deebaca7815b42c192988e10",
"s3_uri": "s3://igvf-files/2023/10/10/f5517084-313f-4f92-aeb5-549ac875cbec/IGVFFI8577YCTI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2067CTMH/",
"accession": "IGVFFI2067CTMH",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:04:22.324262+00:00",
"file_format": "fastq",
"file_size": 13029047652,
"href": "/sequence-files/IGVFFI2067CTMH/@@download/IGVFFI2067CTMH.fastq.gz",
"md5sum": "0468b4fea19bc90c8689e29f3e3ca593",
"s3_uri": "s3://igvf-files/2023/10/10/a102d88e-952b-4188-b187-b09f90e2566e/IGVFFI2067CTMH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0656BDON/",
"accession": "IGVFFI0656BDON",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:25:20.842790+00:00",
"file_format": "fastq",
"file_size": 6389467869,
"href": "/sequence-files/IGVFFI0656BDON/@@download/IGVFFI0656BDON.fastq.gz",
"md5sum": "aa8d8c80aef8b67c3f40ff2344624508",
"s3_uri": "s3://igvf-files/2023/10/10/f91a6bb5-1327-4dbd-8c19-9608697cbf03/IGVFFI0656BDON.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8177ZFIZ/",
"accession": "IGVFFI8177ZFIZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:40:54.936445+00:00",
"file_format": "fastq",
"file_size": 6338561935,
"href": "/sequence-files/IGVFFI8177ZFIZ/@@download/IGVFFI8177ZFIZ.fastq.gz",
"md5sum": "0d893beaf788d3b48b4be413fe503075",
"s3_uri": "s3://igvf-files/2023/10/10/23a85498-68cd-414c-a36a-89c1bc356d88/IGVFFI8177ZFIZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2953POTB/",
"accession": "IGVFFI2953POTB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:56:33.563623+00:00",
"file_format": "fastq",
"file_size": 12889304617,
"href": "/sequence-files/IGVFFI2953POTB/@@download/IGVFFI2953POTB.fastq.gz",
"md5sum": "3688823f1e3143fdbe162d413a199d6b",
"s3_uri": "s3://igvf-files/2023/10/10/1e44653b-324b-430e-a621-8dafc1e0038e/IGVFFI2953POTB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0850ZBOA/",
"accession": "IGVFFI0850ZBOA",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:01:50.142512+00:00",
"file_format": "fastq",
"file_size": 6460051732,
"href": "/sequence-files/IGVFFI0850ZBOA/@@download/IGVFFI0850ZBOA.fastq.gz",
"md5sum": "9ea0e3cb5bb754039a230878b156d74c",
"s3_uri": "s3://igvf-files/2023/10/10/d490a914-ca72-4d71-8bb1-32c93c29dc6a/IGVFFI0850ZBOA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5135SVKW/",
"accession": "IGVFFI5135SVKW",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:43:38.021922+00:00",
"file_format": "fastq",
"file_size": 12647030934,
"href": "/sequence-files/IGVFFI5135SVKW/@@download/IGVFFI5135SVKW.fastq.gz",
"md5sum": "600363446be3a5625bf265f153a5a25b",
"s3_uri": "s3://igvf-files/2023/10/10/4553b3e4-0499-4a5f-9926-eb77a4407aca/IGVFFI5135SVKW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3703VEEK/",
"accession": "IGVFFI3703VEEK",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:48:43.111759+00:00",
"file_format": "fastq",
"file_size": 12908573091,
"href": "/sequence-files/IGVFFI3703VEEK/@@download/IGVFFI3703VEEK.fastq.gz",
"md5sum": "c29751a4bcbc4f720fd9e8123e2bbef0",
"s3_uri": "s3://igvf-files/2023/10/10/5c580aed-e458-4055-99d9-75b906ad897a/IGVFFI3703VEEK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4682UHQN/",
"accession": "IGVFFI4682UHQN",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:12:23.515123+00:00",
"file_format": "fastq",
"file_size": 12751873740,
"href": "/sequence-files/IGVFFI4682UHQN/@@download/IGVFFI4682UHQN.fastq.gz",
"md5sum": "52f3c97e6ea5d472ee174cd28cc350c9",
"s3_uri": "s3://igvf-files/2023/10/10/3e6b01a5-6155-4cfc-9207-d2adfa98dc02/IGVFFI4682UHQN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6427QJRQ/",
"accession": "IGVFFI6427QJRQ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:35:51.673087+00:00",
"file_format": "fastq",
"file_size": 12532451330,
"href": "/sequence-files/IGVFFI6427QJRQ/@@download/IGVFFI6427QJRQ.fastq.gz",
"md5sum": "ce7b93a768c758236c7aa78255550234",
"s3_uri": "s3://igvf-files/2023/10/10/a5ca63ce-5b22-40c3-8be5-cb0f073c205a/IGVFFI6427QJRQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0553GMHE/",
"accession": "IGVFFI0553GMHE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:48:42.337473+00:00",
"file_format": "fastq",
"file_size": 6396239609,
"href": "/sequence-files/IGVFFI0553GMHE/@@download/IGVFFI0553GMHE.fastq.gz",
"md5sum": "31fb566283b7200fb12014cc769d5a53",
"s3_uri": "s3://igvf-files/2023/10/10/c05a984e-e1f4-4789-8d75-e6fbfe01f059/IGVFFI0553GMHE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5783KSKH/",
"accession": "IGVFFI5783KSKH",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:17:38.061329+00:00",
"file_format": "fastq",
"file_size": 6393873536,
"href": "/sequence-files/IGVFFI5783KSKH/@@download/IGVFFI5783KSKH.fastq.gz",
"md5sum": "f6309ab9cd1fa5c4faa36206e3d84f03",
"s3_uri": "s3://igvf-files/2023/10/10/41c2b1e0-38c3-48f2-8ae3-32ae89dbfa7e/IGVFFI5783KSKH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4983PORB/",
"accession": "IGVFFI4983PORB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:20:17.873102+00:00",
"file_format": "fastq",
"file_size": 12575021744,
"href": "/sequence-files/IGVFFI4983PORB/@@download/IGVFFI4983PORB.fastq.gz",
"md5sum": "bc3ab6a9b5a2af9b6bd0053a29fcc2af",
"s3_uri": "s3://igvf-files/2023/10/10/f4620a56-4332-4de3-8399-d64318e14815/IGVFFI4983PORB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5868EOST/",
"accession": "IGVFFI5868EOST",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:33:10.771726+00:00",
"file_format": "fastq",
"file_size": 6416646577,
"href": "/sequence-files/IGVFFI5868EOST/@@download/IGVFFI5868EOST.fastq.gz",
"md5sum": "ae8bc33f23d665e219f96c3446ba46f4",
"s3_uri": "s3://igvf-files/2023/10/10/c0c8c92a-07de-4431-b290-b267b6b078ff/IGVFFI5868EOST.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5550JTNZ/",
"accession": "IGVFFI5550JTNZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:09:36.252433+00:00",
"file_format": "fastq",
"file_size": 6545265477,
"href": "/sequence-files/IGVFFI5550JTNZ/@@download/IGVFFI5550JTNZ.fastq.gz",
"md5sum": "d5d494a650ae9c4f1f61a0a3742837bd",
"s3_uri": "s3://igvf-files/2023/10/10/8313ab8d-d07a-45c8-91a4-9038af5a2778/IGVFFI5550JTNZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B06_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7708DBDX/",
"accession": "IGVFFI7708DBDX",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T08:28:00.895842+00:00",
"file_format": "fastq",
"file_size": 12673163680,
"href": "/sequence-files/IGVFFI7708DBDX/@@download/IGVFFI7708DBDX.fastq.gz",
"md5sum": "e6f4da2063686034b290c9812d446712",
"s3_uri": "s3://igvf-files/2023/10/10/00008439-4f88-4b7b-86bf-7f716d7ec2b6/IGVFFI7708DBDX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B06_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4332EQLM/",
"accession": "IGVFFI4332EQLM",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:43.079826+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI4332EQLM/@@download/IGVFFI4332EQLM.yaml.gz",
"md5sum": "ebc530b2a478c3c5d7e87abbf88bb497",
"s3_uri": "s3://igvf-files/2024/09/17/3793d682-1e9f-4a77-b25f-6ae6c450ec91/IGVFFI4332EQLM.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8056NKDF/",
"accession": "IGVFFI8056NKDF",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:41.802694+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI8056NKDF/@@download/IGVFFI8056NKDF.yaml.gz",
"md5sum": "bf153adea0b2d324fb4f51f12f8ddfc5",
"s3_uri": "s3://igvf-files/2024/09/17/c44f24ef-c7af-418d-b481-b70cb4b3f422/IGVFFI8056NKDF.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4951CHHR/",
"accession": "IGVFFI4951CHHR",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:40.466019+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI4951CHHR/@@download/IGVFFI4951CHHR.yaml.gz",
"md5sum": "71ff31e79fe31c41448f7f155c38de32",
"s3_uri": "s3://igvf-files/2024/09/17/9c3c6e7d-fe42-4c0a-bfcb-eda5c1790ae6/IGVFFI4951CHHR.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6559XDBJ/",
"accession": "IGVFFI6559XDBJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:47.821082+00:00",
"file_format": "yaml",
"file_size": 1348,
"href": "/configuration-files/IGVFFI6559XDBJ/@@download/IGVFFI6559XDBJ.yaml.gz",
"md5sum": "7e710c0fab400c361e164222f4fbd0b9",
"s3_uri": "s3://igvf-files/2024/09/17/d41c346f-705b-480b-a08e-2cd62d1c3c38/IGVFFI6559XDBJ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7281FNSK/",
"accession": "IGVFFI7281FNSK",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:46.630480+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI7281FNSK/@@download/IGVFFI7281FNSK.yaml.gz",
"md5sum": "933e5ecf6fcbd4aae5e3ab99f28a6ee7",
"s3_uri": "s3://igvf-files/2024/09/17/56392f03-6d63-467c-9f1e-145f13edccc4/IGVFFI7281FNSK.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2069ETAZ/",
"accession": "IGVFFI2069ETAZ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:39.238917+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI2069ETAZ/@@download/IGVFFI2069ETAZ.yaml.gz",
"md5sum": "672c0dbb2b8bf9430a5a1825f9f1da89",
"s3_uri": "s3://igvf-files/2024/09/17/3e2cde12-2e8a-463c-ad86-4087c07a1c2b/IGVFFI2069ETAZ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0821UMBR/",
"accession": "IGVFFI0821UMBR",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:45.468224+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI0821UMBR/@@download/IGVFFI0821UMBR.yaml.gz",
"md5sum": "c3d6a0edb817ba492cf7378c0bac8ce3",
"s3_uri": "s3://igvf-files/2024/09/17/c9f68a1e-7e17-46f2-a799-4f081c9436e2/IGVFFI0821UMBR.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7615NGAJ/",
"accession": "IGVFFI7615NGAJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:44.253429+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI7615NGAJ/@@download/IGVFFI7615NGAJ.yaml.gz",
"md5sum": "ca4855b664f729825864d1f02687722d",
"s3_uri": "s3://igvf-files/2024/09/17/9f2bd665-859a-4521-a902-65c5accacc6e/IGVFFI7615NGAJ.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7940GLSG/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-36wgq3e3ylk5/v1",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n92ldm8b8l5b/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-5qpvo3837v4o/v1",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T00:17:19.579627+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM3256AAJO/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3256AAJO",
"aliases": [
"ali-mortazavi:subpool_007_67E"
],
"cellular_sub_pool": "007_67E",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "pituitary gland",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000473/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "testis",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "ovary",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "oviduct",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "epididymis",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "hypothalamus",
"term_name": "hypothalamus"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-10T07:48:43.111759+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "94940cb6-f01a-4d34-84d2-66e2084d82bd"
}