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INDEXED
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MeasurementSet
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IGVFDS8538QPTO
IGVFDS8538QPTO
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 178)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 436
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
39 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0143OQOB
fastq
reads
R1
8560
Read 1
IGVFFI6948KGTG
Illumina NovaSeq X
22LMVNLT4
15 MB
Jason Buenrostro, Broad
validated
IGVFFI0522PHFU
fastq
reads
R2
972
Read 2
IGVFFI6412BUQP
Illumina NovaSeq X
22773CLT3
580 MB
Jason Buenrostro, Broad
validated
IGVFFI0688LMNW
fastq
reads
I1
8752
Barcode index
IGVFFI5201YHBZ
Illumina NovaSeq X
22LMVNLT4
8.7 MB
Jason Buenrostro, Broad
validated
IGVFFI0698AQHR
fastq
reads
R2
1056
Read 2
IGVFFI5456PXTL
Illumina NovaSeq X
22773CLT3
573 MB
Jason Buenrostro, Broad
validated
IGVFFI0837YKBY
fastq
reads
I1
8944
Barcode index
IGVFFI7190ARET
Illumina NovaSeq X
22LMVNLT4
8.4 MB
Jason Buenrostro, Broad
validated
IGVFFI1617NWGV
fastq
reads
I1
1056
Barcode index
IGVFFI5456PXTL
Illumina NovaSeq X
22773CLT3
507 MB
Jason Buenrostro, Broad
validated
IGVFFI1667PHJS
fastq
reads
I1
1014
Barcode index
IGVFFI1643RZQI
Illumina NovaSeq X
22773CLT3
517 MB
Jason Buenrostro, Broad
validated
IGVFFI1758QPHN
fastq
reads
R2
9040
Read 2
IGVFFI3220XMQL
Illumina NovaSeq X
22LMVNLT4
14 MB
Jason Buenrostro, Broad
validated
IGVFFI2750EDXV
fastq
reads
R1
972
Read 1
IGVFFI6412BUQP
Illumina NovaSeq X
22773CLT3
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI3016WQOO
fastq
reads
R1
930
Read 1
IGVFFI8157ZDEP
Illumina NovaSeq X
22773CLT3
1.2 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4139CZDR
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 178)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1570ICJV
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 427
Jason Buenrostro, Broad