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INDEXED
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MeasurementSet
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IGVFDS8528TQHC
IGVFDS8528TQHC
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
bradley-bernstein:scATAC Lib 115
buenrostro-bernstein:scATAC Lib 115
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3550CIIB
fastq
reads
R2
261
Read 2, Barcode index
IGVFFI6435JSJB
Illumina NovaSeq 6000
768 MB
Jason Buenrostro, Broad
validated
IGVFFI4401IERR
fastq
reads
R1
251
Read 1
IGVFFI7894WFLU
Illumina NovaSeq 6000
440 MB
Jason Buenrostro, Broad
validated
IGVFFI5516VUUY
fastq
reads
R2
251
Read 2, Barcode index
IGVFFI7894WFLU
Illumina NovaSeq 6000
772 MB
Jason Buenrostro, Broad
validated
IGVFFI9611UAWB
fastq
reads
R1
261
Read 1
IGVFFI6435JSJB
Illumina NovaSeq 6000
438 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9781HISX
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1318PLKS
bradley-bernstein:Donor 1503
buenrostro-bernstein:Donor 1503
female
Mus musculus
Related Multiome Datasets
5 items
Accession
Type
Summary
Aliases
Lab
IGVFDS0956TMWA
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 116
buenrostro-bernstein:scATAC Lib 116
Jason Buenrostro, Broad
IGVFDS4464LQXA
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 126
buenrostro-bernstein:scRNA Lib 126
Jason Buenrostro, Broad
IGVFDS7709QUBW
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 125
buenrostro-bernstein:scRNA Lib 125
Jason Buenrostro, Broad
IGVFDS8248GGOY
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 124
buenrostro-bernstein:scRNA Lib 124
Jason Buenrostro, Broad
IGVFDS8645IDXO
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 117
buenrostro-bernstein:scATAC Lib 117
Jason Buenrostro, Broad
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad