{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8460SRNI/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8460SRNI",
"aliases": [
"bradley-bernstein:scRNA Lib 11",
"buenrostro-bernstein:scRNA Lib 11"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM6909NWSZ](/primary-cells/IGVFSM6909NWSZ/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM6909NWSZ/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8460SRNI](/measurement-sets/IGVFDS8460SRNI/) has sequence file(s): [IGVFFI7589KGQJ](/sequence-files/IGVFFI7589KGQJ/), [IGVFFI1605OPQV](/sequence-files/IGVFFI1605OPQV/), [IGVFFI1197FROO](/sequence-files/IGVFFI1197FROO/), [IGVFFI7777KPXN](/sequence-files/IGVFFI7777KPXN/), [IGVFFI5687AMYX](/sequence-files/IGVFFI5687AMYX/), [IGVFFI1654DSPU](/sequence-files/IGVFFI1654DSPU/), [IGVFFI2619KEUX](/sequence-files/IGVFFI2619KEUX/), [IGVFFI4549XDZT](/sequence-files/IGVFFI4549XDZT/), [IGVFFI6594XWYY](/sequence-files/IGVFFI6594XWYY/), [IGVFFI4735OBXN](/sequence-files/IGVFFI4735OBXN/), [IGVFFI3025DGMV](/sequence-files/IGVFFI3025DGMV/), [IGVFFI8360IWPQ](/sequence-files/IGVFFI8360IWPQ/), [IGVFFI9944GAGI](/sequence-files/IGVFFI9944GAGI/), [IGVFFI4446KQIF](/sequence-files/IGVFFI4446KQIF/), [IGVFFI6200UQKI](/sequence-files/IGVFFI6200UQKI/), [IGVFFI8080XFJI](/sequence-files/IGVFFI8080XFJI/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8460SRNI/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8460SRNI](/measurement-sets/IGVFDS8460SRNI/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8460SRNI/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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],
"accession": "IGVFSM6909NWSZ",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 2",
"buenrostro-bernstein:BioSam 4567_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:32.698046+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "aa360b6d-bafb-46d4-bec6-230ca58bf01e"
}