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INDEXED
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MeasurementSet
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IGVFDS8414QFVF
IGVFDS8414QFVF
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C39_day5
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1366ZVFZ
fastq
reads
R2
2
Illumina NovaSeq X
2
6.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI1753NANQ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
4
6.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI2879EPPD
fastq
reads
R2
2
Illumina NovaSeq X
1
6.1 GB
Chongyuan Luo, UCLA
validated
IGVFFI5083FIPK
fastq
reads
R1
1
Illumina NovaSeq X
3
6.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI6520MHQM
fastq
reads
R2
2
Illumina NovaSeq X
4
6.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI7395GREV
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
3
6.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI9129DPVD
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2
6.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI9474RLDP
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
1
6.1 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4751ZQCG
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA