{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8367BZNA",
"aliases": [
"bradley-bernstein:scATAC Lib 28",
"buenrostro-bernstein:scATAC Lib 28"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8367BZNA](/measurement-sets/IGVFDS8367BZNA/) has sequence file(s): [IGVFFI7094XIIL](/sequence-files/IGVFFI7094XIIL/), [IGVFFI0178KMNF](/sequence-files/IGVFFI0178KMNF/), [IGVFFI7730CXJN](/sequence-files/IGVFFI7730CXJN/), [IGVFFI6473ENPD](/sequence-files/IGVFFI6473ENPD/), [IGVFFI1807XDTM](/sequence-files/IGVFFI1807XDTM/), [IGVFFI1283WSJT](/sequence-files/IGVFFI1283WSJT/), [IGVFFI0957SATH](/sequence-files/IGVFFI0957SATH/), [IGVFFI8713GEGT](/sequence-files/IGVFFI8713GEGT/), [IGVFFI7153OJTC](/sequence-files/IGVFFI7153OJTC/), [IGVFFI4224PUWY](/sequence-files/IGVFFI4224PUWY/), [IGVFFI0177QUIO](/sequence-files/IGVFFI0177QUIO/), [IGVFFI6658TXRR](/sequence-files/IGVFFI6658TXRR/), [IGVFFI6659WSQI](/sequence-files/IGVFFI6659WSQI/), [IGVFFI9664HPAK](/sequence-files/IGVFFI9664HPAK/), [IGVFFI7352VJYZ](/sequence-files/IGVFFI7352VJYZ/), [IGVFFI7981TIFK](/sequence-files/IGVFFI7981TIFK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8367BZNA/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9794GFPU](/primary-cells/IGVFSM9794GFPU/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9794GFPU/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8367BZNA](/measurement-sets/IGVFDS8367BZNA/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8367BZNA/"
}
]
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 5",
"buenrostro-bernstein:BioSam 4566_SS-PKR 5"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 5), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:02.982008+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "69ef0676-7c1d-4fe0-a38b-29e6d183651d"
}