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MeasurementSet
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IGVFDS8318EODY
IGVFDS8318EODY
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X044_G2_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1162MHJT
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
6
468 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1417URKS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2514XCHJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3057OFDP
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
5
474 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5133BXGX
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
7
485 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5853VWQL
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6282WVTL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
5
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6349IIYR
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6889PGTI
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6911FZER
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
8
473 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6240XBPL
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO2207KFPL
igvf:corces_donor_BANN0413
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO7606UOXI
igvf:corces_donor_BANN1570
male
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8817BLIU
igvf:corces_donor_BANN1039
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8707VRYD
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X044_G2_RNA
Ryan Corces, Gladstone Institute UCSF