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INDEXED
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MeasurementSet
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IGVFDS8308NSRV
IGVFDS8308NSRV
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C39_day14
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2533UFES
fastq
reads
R1
1
Illumina NovaSeq X
3
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI4030WVWW
fastq
reads
R2
2
Illumina NovaSeq X
3
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI4781XFCT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
1
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI5034WBWM
fastq
reads
R1
1
Illumina NovaSeq X
2
5.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI7864AJGM
fastq
reads
R2
2
Illumina NovaSeq X
4
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI8697VDOS
fastq
reads
R2
2
Illumina NovaSeq X
2
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI9564UGNQ
fastq
reads
R2
2
Illumina NovaSeq X
1
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI9602SVTH
fastq
reads
R1
1
Illumina NovaSeq X
4
5.8 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3325VZXM
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA