{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS8285ZBBZ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8285ZBBZ",
"aliases": [
"ali-mortazavi:009_67B_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS8285ZBBZ](/measurement-sets/IGVFDS8285ZBBZ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS8285ZBBZ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8285ZBBZ](/measurement-sets/IGVFDS8285ZBBZ/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8285ZBBZ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS8285ZBBZ](/measurement-sets/IGVFDS8285ZBBZ/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS8285ZBBZ/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM2763CYLD](/multiplexed-samples/IGVFSM2763CYLD/) has in progress subobject tabular file [IGVFFI9994MHCA](/tabular-files/IGVFFI9994MHCA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM2763CYLD/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM2763CYLD](/multiplexed-samples/IGVFSM2763CYLD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM2763CYLD/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-12T16:21:10.402359+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2753JGYS/",
"accession": "IGVFDO2753JGYS",
"aliases": [
"ali-mortazavi:095_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI6174BRJJ/",
"accession": "IGVFFI6174BRJJ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T18:56:16.061350+00:00",
"file_format": "fastq",
"file_size": 10622089554,
"href": "/sequence-files/IGVFFI6174BRJJ/@@download/IGVFFI6174BRJJ.fastq.gz",
"md5sum": "06554c2f478287de2acf2b1d857d053f",
"s3_uri": "s3://igvf-files/2023/10/12/175c9ea9-203a-4e6f-9715-6511902e7aa5/IGVFFI6174BRJJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2259NMXY/",
"accession": "IGVFFI2259NMXY",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:10:10.318399+00:00",
"file_format": "fastq",
"file_size": 5370154622,
"href": "/sequence-files/IGVFFI2259NMXY/@@download/IGVFFI2259NMXY.fastq.gz",
"md5sum": "d94d574622c4d38a66f4fe49e98159e9",
"s3_uri": "s3://igvf-files/2023/10/12/ffbb6339-bbc1-48f5-a134-4937b09a888d/IGVFFI2259NMXY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4232OPQT/",
"accession": "IGVFFI4232OPQT",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:36:27.933347+00:00",
"file_format": "fastq",
"file_size": 5248719762,
"href": "/sequence-files/IGVFFI4232OPQT/@@download/IGVFFI4232OPQT.fastq.gz",
"md5sum": "2f4823e926c895e954d10acfb654e5bb",
"s3_uri": "s3://igvf-files/2023/10/12/6fc63028-3560-45a2-b935-b9fd27fc0fdd/IGVFFI4232OPQT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2425ZIJZ/",
"accession": "IGVFFI2425ZIJZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:55:48.494060+00:00",
"file_format": "fastq",
"file_size": 10317510803,
"href": "/sequence-files/IGVFFI2425ZIJZ/@@download/IGVFFI2425ZIJZ.fastq.gz",
"md5sum": "5f645f3e3c2018bfa742bbdbd4a3ed5c",
"s3_uri": "s3://igvf-files/2023/10/12/d34f523a-593b-4c19-bac5-a97fe53741b3/IGVFFI2425ZIJZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2170UUGC/",
"accession": "IGVFFI2170UUGC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:12:55.337553+00:00",
"file_format": "fastq",
"file_size": 10767937805,
"href": "/sequence-files/IGVFFI2170UUGC/@@download/IGVFFI2170UUGC.fastq.gz",
"md5sum": "a2af3f7cfa0347b26b7cb927195486af",
"s3_uri": "s3://igvf-files/2023/10/12/09f1bcde-39d4-4937-a331-4fa4a757d8a4/IGVFFI2170UUGC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0633VATC/",
"accession": "IGVFFI0633VATC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:30:54.399958+00:00",
"file_format": "fastq",
"file_size": 10284359832,
"href": "/sequence-files/IGVFFI0633VATC/@@download/IGVFFI0633VATC.fastq.gz",
"md5sum": "78b5faa31d48185e9f61c37bc85a13e2",
"s3_uri": "s3://igvf-files/2023/10/12/f25fca50-7e97-4ba3-a2e1-19a3b9ed99ab/IGVFFI0633VATC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0111WINZ/",
"accession": "IGVFFI0111WINZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:39:24.436101+00:00",
"file_format": "fastq",
"file_size": 10419920525,
"href": "/sequence-files/IGVFFI0111WINZ/@@download/IGVFFI0111WINZ.fastq.gz",
"md5sum": "faa73bdcb44f65574964f4f719566fce",
"s3_uri": "s3://igvf-files/2023/10/12/ecb16bef-876c-4b47-bcd3-8a9f55b78599/IGVFFI0111WINZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9529JHKI/",
"accession": "IGVFFI9529JHKI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:04:31.459401+00:00",
"file_format": "fastq",
"file_size": 10765266597,
"href": "/sequence-files/IGVFFI9529JHKI/@@download/IGVFFI9529JHKI.fastq.gz",
"md5sum": "e0e7dbc67064552dfa4105cc00ad2412",
"s3_uri": "s3://igvf-files/2023/10/12/9554b0c3-047e-4ce7-ad21-23283aab783d/IGVFFI9529JHKI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5077ZNVW/",
"accession": "IGVFFI5077ZNVW",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:18:35.531152+00:00",
"file_format": "fastq",
"file_size": 5367675044,
"href": "/sequence-files/IGVFFI5077ZNVW/@@download/IGVFFI5077ZNVW.fastq.gz",
"md5sum": "275c42ba1c0fdf993189d0b41b9c6d78",
"s3_uri": "s3://igvf-files/2023/10/12/a3b7ea1e-8c44-495a-b780-61b1e9604a0f/IGVFFI5077ZNVW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3046PBRN/",
"accession": "IGVFFI3046PBRN",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:47:49.700665+00:00",
"file_format": "fastq",
"file_size": 10334104306,
"href": "/sequence-files/IGVFFI3046PBRN/@@download/IGVFFI3046PBRN.fastq.gz",
"md5sum": "ad8b477225de6bf538848650661ca5ea",
"s3_uri": "s3://igvf-files/2023/10/12/548880da-a33a-4ff2-a362-c766c25007aa/IGVFFI3046PBRN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2722ZYFK/",
"accession": "IGVFFI2722ZYFK",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:01:36.036913+00:00",
"file_format": "fastq",
"file_size": 5341117553,
"href": "/sequence-files/IGVFFI2722ZYFK/@@download/IGVFFI2722ZYFK.fastq.gz",
"md5sum": "062d171fb3c0faff163d195bbae0a928",
"s3_uri": "s3://igvf-files/2023/10/12/3ed4c377-a72f-4d09-8dca-d48132198267/IGVFFI2722ZYFK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2759NOQF/",
"accession": "IGVFFI2759NOQF",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:28:05.234574+00:00",
"file_format": "fastq",
"file_size": 5263513032,
"href": "/sequence-files/IGVFFI2759NOQF/@@download/IGVFFI2759NOQF.fastq.gz",
"md5sum": "ba154b08963ee7463634f86a81b0dc99",
"s3_uri": "s3://igvf-files/2023/10/12/c0b951d0-460b-40ef-a229-06b63708e903/IGVFFI2759NOQF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5147YHWY/",
"accession": "IGVFFI5147YHWY",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:53:05.813793+00:00",
"file_format": "fastq",
"file_size": 5227755924,
"href": "/sequence-files/IGVFFI5147YHWY/@@download/IGVFFI5147YHWY.fastq.gz",
"md5sum": "e381af6ad55cc3629db3d942bffd7e02",
"s3_uri": "s3://igvf-files/2023/10/12/c2736ae6-b199-45c5-b1fd-5d930594023f/IGVFFI5147YHWY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8742LTYK/",
"accession": "IGVFFI8742LTYK",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:21:50.266011+00:00",
"file_format": "fastq",
"file_size": 10470635561,
"href": "/sequence-files/IGVFFI8742LTYK/@@download/IGVFFI8742LTYK.fastq.gz",
"md5sum": "fe22d3086f0d5de95d6e7c3a135e6b46",
"s3_uri": "s3://igvf-files/2023/10/12/859cef01-9aca-4f0c-95cd-743eebbec199/IGVFFI8742LTYK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B03_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5872MRDO/",
"accession": "IGVFFI5872MRDO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T20:01:23.560918+00:00",
"file_format": "fastq",
"file_size": 5221424130,
"href": "/sequence-files/IGVFFI5872MRDO/@@download/IGVFFI5872MRDO.fastq.gz",
"md5sum": "60bff48f5cd55e0498b878464ee18db8",
"s3_uri": "s3://igvf-files/2023/10/12/140a12eb-b10c-4f76-aed8-ef871026572b/IGVFFI5872MRDO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6471AODQ/",
"accession": "IGVFFI6471AODQ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T19:45:08.685982+00:00",
"file_format": "fastq",
"file_size": 5258162899,
"href": "/sequence-files/IGVFFI6471AODQ/@@download/IGVFFI6471AODQ.fastq.gz",
"md5sum": "56f5faf1ecc8930f8a86338417072a34",
"s3_uri": "s3://igvf-files/2023/10/12/d9ac7e20-85a3-4b2a-9e64-7e43cd2f5ddb/IGVFFI6471AODQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B03_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8305XMTV/",
"accession": "IGVFFI8305XMTV",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:52.328490+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI8305XMTV/@@download/IGVFFI8305XMTV.yaml.gz",
"md5sum": "e9a0b6c0f5c19787efb030b6f410de23",
"s3_uri": "s3://igvf-files/2024/09/18/72ef3ee6-953b-48d6-9aec-e9c3590423ef/IGVFFI8305XMTV.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6066NTVK/",
"accession": "IGVFFI6066NTVK",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:47.187153+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI6066NTVK/@@download/IGVFFI6066NTVK.yaml.gz",
"md5sum": "1c451750509d651c0dca0e6c62c65d18",
"s3_uri": "s3://igvf-files/2024/09/18/f1ad97be-1c65-4227-a9e9-5cb8a2c82ce8/IGVFFI6066NTVK.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0924FRXB/",
"accession": "IGVFFI0924FRXB",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:49.707854+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI0924FRXB/@@download/IGVFFI0924FRXB.yaml.gz",
"md5sum": "135e26b70e700d6c9d1c52dd0301fa0f",
"s3_uri": "s3://igvf-files/2024/09/18/02921e48-4417-454e-945e-9f8ad660f120/IGVFFI0924FRXB.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5255MWOT/",
"accession": "IGVFFI5255MWOT",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:50.909194+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI5255MWOT/@@download/IGVFFI5255MWOT.yaml.gz",
"md5sum": "b5fe9548ab29aa28d7bb28f8cc5850bb",
"s3_uri": "s3://igvf-files/2024/09/18/4e868c72-30f2-4d15-a143-80712fcb38ef/IGVFFI5255MWOT.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5654JULX/",
"accession": "IGVFFI5654JULX",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:56.042128+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI5654JULX/@@download/IGVFFI5654JULX.yaml.gz",
"md5sum": "d44136fa46b07c7cc462d46bfd1853e5",
"s3_uri": "s3://igvf-files/2024/09/18/a9827572-4aab-4830-b592-61a1e38d85bf/IGVFFI5654JULX.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5380KVLT/",
"accession": "IGVFFI5380KVLT",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:54.860433+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI5380KVLT/@@download/IGVFFI5380KVLT.yaml.gz",
"md5sum": "37a6dba994d8487285ccfc46badafc3c",
"s3_uri": "s3://igvf-files/2024/09/18/077545f2-9c55-4987-85d9-4572f5596aee/IGVFFI5380KVLT.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3717OOBA/",
"accession": "IGVFFI3717OOBA",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:48.441105+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI3717OOBA/@@download/IGVFFI3717OOBA.yaml.gz",
"md5sum": "255785751e6e3c56aa5f56c92930d0f7",
"s3_uri": "s3://igvf-files/2024/09/18/966f9fe3-3be3-4201-afc0-9caba05d9305/IGVFFI3717OOBA.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3774MEDD/",
"accession": "IGVFFI3774MEDD",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:30:53.662807+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI3774MEDD/@@download/IGVFFI3774MEDD.yaml.gz",
"md5sum": "e486ce7200e69f67cfe4e40cccb83f1d",
"s3_uri": "s3://igvf-files/2024/09/18/2448bedd-e318-4af3-9272-06a9664c4e36/IGVFFI3774MEDD.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4238QWZM/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T00:57:36.493435+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2763CYLD/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2763CYLD",
"aliases": [
"ali-mortazavi:subpool_009_67B"
],
"cellular_sub_pool": "009_67B",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002113/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "kidney",
"term_name": "kidney"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "adrenal gland",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-12T18:56:16.061350+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "b4e031b2-a955-4323-8312-c3cdb14d4cd3"
}