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INDEXED
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MeasurementSet
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IGVFDS8259EHVC
IGVFDS8259EHVC
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 172)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 399
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0803BJPO
fastq
reads
R2
3869
Read 2
IGVFFI4225RLOQ
Illumina NovaSeq X
22523KLT3
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI1261OSQV
fastq
reads
R1
4329
Read 1
IGVFFI5615VGPS
Illumina NovaSeq 6000
H75F7DSX5
6.9 GB
Jason Buenrostro, Broad
validated
IGVFFI2509KGDL
fastq
reads
I1
4365
Barcode index
IGVFFI4559ZDST
Illumina NovaSeq 6000
H75F7DSX5
2.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2537LZMC
fastq
reads
R2
3905
Read 2
IGVFFI9896DGPI
Illumina NovaSeq X
22523KLT3
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI4109WOPI
fastq
reads
I1
3869
Barcode index
IGVFFI4225RLOQ
Illumina NovaSeq X
22523KLT3
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI4221JNNZ
fastq
reads
R2
4365
Read 2
IGVFFI4559ZDST
Illumina NovaSeq 6000
H75F7DSX5
2.9 GB
Jason Buenrostro, Broad
validated
IGVFFI4663JNNS
fastq
reads
R1
3905
Read 1
IGVFFI9896DGPI
Illumina NovaSeq X
22523KLT3
2.5 GB
Jason Buenrostro, Broad
validated
IGVFFI6632WSPV
fastq
reads
R1
4365
Read 1
IGVFFI4559ZDST
Illumina NovaSeq 6000
H75F7DSX5
6.5 GB
Jason Buenrostro, Broad
validated
IGVFFI6807NILB
fastq
reads
R1
3869
Read 1
IGVFFI4225RLOQ
Illumina NovaSeq X
22523KLT3
2.5 GB
Jason Buenrostro, Broad
validated
IGVFFI7327HLEU
fastq
reads
R2
4329
Read 2
IGVFFI5615VGPS
Illumina NovaSeq 6000
H75F7DSX5
3.1 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8891SAOK
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 172)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7175NPWC
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 272
Jason Buenrostro, Broad