{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8220TVLN",
"aliases": [
"bradley-bernstein:scATAC Lib 47",
"buenrostro-bernstein:scATAC Lib 47"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS8220TVLN](/measurement-sets/IGVFDS8220TVLN/) has sequence file(s): [IGVFFI7728RTLK](/sequence-files/IGVFFI7728RTLK/), [IGVFFI5569OLAI](/sequence-files/IGVFFI5569OLAI/), [IGVFFI9471YRMG](/sequence-files/IGVFFI9471YRMG/), [IGVFFI2919AYHI](/sequence-files/IGVFFI2919AYHI/), [IGVFFI6645RPQY](/sequence-files/IGVFFI6645RPQY/), [IGVFFI9224WOWW](/sequence-files/IGVFFI9224WOWW/), [IGVFFI4139HAVA](/sequence-files/IGVFFI4139HAVA/), [IGVFFI5225PSKA](/sequence-files/IGVFFI5225PSKA/), [IGVFFI0851SIBG](/sequence-files/IGVFFI0851SIBG/), [IGVFFI6762IVFR](/sequence-files/IGVFFI6762IVFR/), [IGVFFI0920AKPQ](/sequence-files/IGVFFI0920AKPQ/), [IGVFFI7649WJZD](/sequence-files/IGVFFI7649WJZD/), [IGVFFI0653HITA](/sequence-files/IGVFFI0653HITA/), [IGVFFI2844KAKS](/sequence-files/IGVFFI2844KAKS/), [IGVFFI8127ODQP](/sequence-files/IGVFFI8127ODQP/), [IGVFFI1136VKCQ](/sequence-files/IGVFFI1136VKCQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS8220TVLN/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM7551DOFB](/primary-cells/IGVFSM7551DOFB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM7551DOFB/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS8220TVLN](/measurement-sets/IGVFDS8220TVLN/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS8220TVLN/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 8",
"buenrostro-bernstein:BioSam 4567_SS-PKR 8"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:59.682104+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9df43a70-3d84-4656-9c10-12dff19fc108"
}