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IGVFDS8177QVME

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 200)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 558
Submitter Comment
Does not have corresponding scRNA seq MeasurementSet due to failed QC
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

6 items
Read Names
fastq
reads
I1
834
Barcode index
22773CLT3
761 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
816
Read 1
22773CLT3
1.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
834
Read 2
22773CLT3
861 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
816
Barcode index
22773CLT3
761 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
834
Read 1
22773CLT3
1.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
816
Read 2
22773CLT3
858 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 200)

Donors

99 items
Aliases
  • buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens