{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8153TZWE",
"aliases": [
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],
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"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS8153TZWE](/measurement-sets/IGVFDS8153TZWE/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS8153TZWE/"
}
]
},
"award": {
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"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
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"creation_timestamp": "2025-03-05T19:51:23.134586+00:00",
"data_use_limitation_summaries": [
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],
"donors": [
{
"@id": "/human-donors/IGVFDO6277FHPV/",
"accession": "IGVFDO6277FHPV",
"aliases": [
"leif-ludwig:donor2304404009"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
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"file_set_type": "experimental data",
"files": [
{
"@id": "/configuration-files/IGVFFI9333KVYE/",
"accession": "IGVFFI9333KVYE",
"aliases": [
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],
"content_type": "seqspec",
"creation_timestamp": "2025-03-18T17:15:33.740930+00:00",
"file_format": "yaml",
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"href": "/configuration-files/IGVFFI9333KVYE/@@download/IGVFFI9333KVYE.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/18/c49c4398-6ed8-4454-856c-c04b6c6afe8a/IGVFFI9333KVYE.yaml.gz",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2235HDTL/",
"accession": "IGVFFI2235HDTL",
"aliases": [
"leif-ludwig:measurement2304404009_scRNA_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-06T11:34:26.931825+00:00",
"file_format": "fastq",
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"href": "/sequence-files/IGVFFI2235HDTL/@@download/IGVFFI2235HDTL.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/06/10c91570-9951-43b1-948c-4e5b424241b8/IGVFFI2235HDTL.fastq.gz",
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"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8410YOQZ/",
"accession": "IGVFFI8410YOQZ",
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],
"content_type": "reads",
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"creation_timestamp": "2025-03-06T11:37:43.902974+00:00",
"file_format": "fastq",
"file_size": 21102870412,
"href": "/sequence-files/IGVFFI8410YOQZ/@@download/IGVFFI8410YOQZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/03/06/bf1cdf57-af1a-4297-a039-e75219aecf5c/IGVFFI8410YOQZ.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
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"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/leif-ludwig/",
"title": "Leif Ludwig, MDC"
},
"multiome_size": 2,
"notes": "This measurement set previously used scMito-seq as a preferred_assay_title, but this enum is now replaced with 10x multiome with scMito-seq.",
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome with scMito-seq",
"protocols": [
"https://www.protocols.io/view/mtscmultiome-atac-gex-protocol-d554888w"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS4930QMXA/",
"accession": "IGVFDS4930QMXA",
"status": "preview"
}
],
"samples": [
{
"@id": "/primary-cells/IGVFSM2747IYLG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2747IYLG",
"aliases": [
"leif-ludwig:sample2304404009"
],
"classifications": [
"primary cell"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/426307fa-9064-4824-a88a-2e033218fc6c/",
"certificate_identifier": "IP115-11",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_modifiers": [
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],
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "peripheral blood mononuclear cell",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 29 years) peripheral blood mononuclear cell",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
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"title": "Ludwig Lab"
},
"submitted_files_timestamp": "2025-03-06T11:34:26.931825+00:00",
"summary": "10x multiome with scMito-seq",
"uuid": "fe691699-aab9-4f5b-9441-94f41f4020b1"
}