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IGVFDS8061INAG
IGVFDS8061INAG
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP005_G3_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0057MPDB
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
8
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0058PKLN
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
6
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0121ZFEY
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
5
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0590CBDL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
8
716 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0986DSFT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
7
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1564IYKC
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
5
244 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2324MZMR
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
6
236 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2358VDNO
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
7
248 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3313SYHA
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
7
230 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5855GJDR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
7
746 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0891NGTB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1627RQLG
igvf:corces_donor_BANN1170
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9523LMAM
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP005_G3_ATAC
Ryan Corces, Gladstone Institute UCSF