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IGVFDS8045KMMQ
IGVFDS8045KMMQ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP001_G5_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0247PMAO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
3
742 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0503GHAH
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
3
248 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1065ZELE
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
1
189 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1612ENBT
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
1
219 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2133GLQQ
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
3
214 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2336PAAT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
2
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4937NEJK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
1
646 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5011BLUG
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
4
211 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5354MGQJ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
4
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5676PBJM
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
4
744 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7076WLCU
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1728ZLAX
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP001_G5_ATAC
Ryan Corces, Gladstone Institute UCSF