IGVFDS8031TPUH

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 163)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 342

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

3 items

Read Names

IGVFFI2086USYM

fastq

reads

4416

IGVFFI8213CJXG

Illumina NovaSeq X

22JMFMLT3

1.7 GB

Jason Buenrostro, Broad

validated

IGVFFI3230THIT

fastq

reads

4416

IGVFFI8213CJXG

Illumina NovaSeq X

22JMFMLT3

1.7 GB

Jason Buenrostro, Broad

validated

IGVFFI9243SLDV

fastq

reads

4416

Barcode index

IGVFFI8213CJXG

Illumina NovaSeq X

22JMFMLT3

1.0 GB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM7410TNCV

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 163)