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IGVFDS7984TCLH

released
File Set Type
experimental data
Summary
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
massively parallel reporter assay
Sample Summaries
  • mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 modified with a reporter library
Construct Library Sets
  • IGVFDS7655GRFI Reporter library targeting accessible genome regions in many genomic loci
Protocols
Aliases
jay-shendure:dev_CRE_mEBs_GEx_repB_10Xlane2_reads
Publications

Sequencing Results (Illumina)

3 items
fastq
reads
R2
1
Illumina NextSeq 500
HVYHWBGXL
2
1.7 GB
Jay Shendure, UW
validated
fastq
reads
I1
1
Illumina NextSeq 500
HVYHWBGXL
2
370 MB
Jay Shendure, UW
validated
fastq
reads
R1
1
Illumina NextSeq 500
HVYHWBGXL
2
1.1 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 modified with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
principal analysis of MPRA (scQer) data
  • jay-shendure:analysis_set_scQers_mEBs
Jay Shendure, UW

Auxiliary Datasets

2 items
Files
AuxiliarySet
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_mBC_repB_10Xlane2_reads
Jay Shendure, UW
AuxiliarySet
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_oBC_repB_10Xlane2_reads
Jay Shendure, UW

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW