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IGVFDS7972QGPM

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 54.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX2-SC2_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
R1
287
Read 1
5.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
287
Barcode index
3.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
288
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
285
Read 2
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
288
Read 2
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
287
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
288
Read 1
5.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
287
Read 2
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
284
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
284
1.3 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 54.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_288
female
Homo sapiens
  • jimmie-ye:donor_14
female
Homo sapiens
  • jimmie-ye:donor_298
female
Homo sapiens
  • jimmie-ye:donor_314
male
Homo sapiens
  • jimmie-ye:donor_45
male
Homo sapiens
  • jimmie-ye:donor_20
male
Homo sapiens
  • jimmie-ye:donor_132
female
Homo sapiens
  • jimmie-ye:donor_273
female
Homo sapiens
  • jimmie-ye:donor_312
female
Homo sapiens
  • jimmie-ye:donor_338
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX2-SC2_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF