IGVFDS7929XOMS

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 199)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 550

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0724JKCH

fastq

reads

9176

IGVFFI1459OJZW

Illumina NovaSeq X

22LMVNLT4

745 MB

Jason Buenrostro, Broad

validated

IGVFFI0874YSGL

fastq

reads

8600

IGVFFI9419FSIV

Illumina NovaSeq X

22LMVNLT4

794 MB

Jason Buenrostro, Broad

validated

IGVFFI1155ESYJ

fastq

reads

8504

IGVFFI5265TBLK

Illumina NovaSeq X

22LMVNLT4

858 MB

Jason Buenrostro, Broad

validated

IGVFFI1684JNQR

fastq

reads

8888

IGVFFI2675MIGE

Illumina NovaSeq X

22LMVNLT4

796 MB

Jason Buenrostro, Broad

validated

IGVFFI1815ZCGP

fastq

reads

8792

IGVFFI0238PQTW

Illumina NovaSeq X

22LMVNLT4

793 MB

Jason Buenrostro, Broad

validated

IGVFFI2162JFNA

fastq

reads

8984

Barcode index

IGVFFI3574RECZ

Illumina NovaSeq X

22LMVNLT4

465 MB

Jason Buenrostro, Broad

validated

IGVFFI2380WKJD

fastq

reads

8984

IGVFFI3574RECZ

Illumina NovaSeq X

22LMVNLT4

753 MB

Jason Buenrostro, Broad

validated

IGVFFI2843PYEN

fastq

reads

8600

Barcode index

IGVFFI9419FSIV

Illumina NovaSeq X

22LMVNLT4

485 MB

Jason Buenrostro, Broad

validated

IGVFFI2933ZBVB

fastq

reads

4255

IGVFFI2380WLBY

Illumina NovaSeq X

22523KLT3

1.1 GB

Jason Buenrostro, Broad

validated

IGVFFI3348LFGT

fastq

reads

4306

IGVFFI1388CDMX

Illumina NovaSeq 6000

H75F7DSX5

5.2 GB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM4768GZVP

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 199)