{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7919DUHD",
"aliases": [
"bradley-bernstein:scRNA Lib 13",
"buenrostro-bernstein:scRNA Lib 13"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7919DUHD](/measurement-sets/IGVFDS7919DUHD/) has sequence file(s): [IGVFFI8559MYDX](/sequence-files/IGVFFI8559MYDX/), [IGVFFI2607LDNU](/sequence-files/IGVFFI2607LDNU/), [IGVFFI2380ARLU](/sequence-files/IGVFFI2380ARLU/), [IGVFFI9181PQVD](/sequence-files/IGVFFI9181PQVD/), [IGVFFI1693EDXK](/sequence-files/IGVFFI1693EDXK/), [IGVFFI7002LZLR](/sequence-files/IGVFFI7002LZLR/), [IGVFFI0178IHNS](/sequence-files/IGVFFI0178IHNS/), [IGVFFI7367DSKV](/sequence-files/IGVFFI7367DSKV/), [IGVFFI5800EUPI](/sequence-files/IGVFFI5800EUPI/), [IGVFFI6606GTSF](/sequence-files/IGVFFI6606GTSF/), [IGVFFI3952NJOF](/sequence-files/IGVFFI3952NJOF/), [IGVFFI4789ZNLM](/sequence-files/IGVFFI4789ZNLM/), [IGVFFI2070DCTH](/sequence-files/IGVFFI2070DCTH/), [IGVFFI8915MCXV](/sequence-files/IGVFFI8915MCXV/), [IGVFFI2536WZTV](/sequence-files/IGVFFI2536WZTV/), [IGVFFI2703DMIN](/sequence-files/IGVFFI2703DMIN/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7919DUHD/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM6852UYUG](/primary-cells/IGVFSM6852UYUG/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM6852UYUG/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7919DUHD](/measurement-sets/IGVFDS7919DUHD/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7919DUHD/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:23:28.183769+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "53695461-9f38-4fee-b3e1-2301ede8bf5e"
}