IGVFDS7908VMTV

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS7908VMTV/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS7908VMTV",
10    "aliases": [
11        "ali-mortazavi:009_67N_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Multiplexed sample [IGVFSM1137BDHM](/multiplexed-samples/IGVFSM1137BDHM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_sample_missing_publication",
29                "path": "/multiplexed-samples/IGVFSM1137BDHM/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Measurement set [IGVFDS7908VMTV](/measurement-sets/IGVFDS7908VMTV/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_file_set_missing_publication",
37                "path": "/measurement-sets/IGVFDS7908VMTV/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS7908VMTV](/measurement-sets/IGVFDS7908VMTV/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS7908VMTV/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS7908VMTV](/measurement-sets/IGVFDS7908VMTV/) has in progress subobject tabular file [IGVFFI4529PWCF](/tabular-files/IGVFFI4529PWCF/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS7908VMTV/"
54            },
55            {
56                "category": "mismatched status",
57                "detail": "Released measurement set [IGVFDS7908VMTV](/measurement-sets/IGVFDS7908VMTV/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_item_status",
61                "path": "/measurement-sets/IGVFDS7908VMTV/"
62            }
63        ]
64    },
65    "award": {
66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "barcode_replacement_file": "/tabular-files/IGVFFI4529PWCF/",
75    "control_for": [],
76    "creation_timestamp": "2023-10-12T16:21:09.029263+00:00",
77    "data_use_limitation_summaries": [
78        "no certificate"
79    ],
80    "donors": [
81        {
82            "@id": "/rodent-donors/IGVFDO3762EAWT/",
83            "accession": "IGVFDO3762EAWT",
84            "aliases": [
85                "ali-mortazavi:076_PWKJ_10F"
86            ],
87            "sex": "female",
88            "status": "released",
89            "strain_background": "PWK/PhJ (PWK)",
90            "taxa": "Mus musculus"
91        },
92        {
93            "@id": "/rodent-donors/IGVFDO2292YGGE/",
94            "accession": "IGVFDO2292YGGE",
95            "aliases": [
96                "ali-mortazavi:049_NZOJ_10M"
97            ],
98            "sex": "male",
99            "status": "released",
100            "strain_background": "NZO/H1LtJ (NZO)",
101            "taxa": "Mus musculus"
102        },
103        {
104            "@id": "/rodent-donors/IGVFDO3655FKMR/",
105            "accession": "IGVFDO3655FKMR",
106            "aliases": [
107                "ali-mortazavi:025_B6J_10M"
108            ],
109            "sex": "male",
110            "status": "released",
111            "strain_background": "C57BL/6J (B6)",
112            "taxa": "Mus musculus"
113        },
114        {
115            "@id": "/rodent-donors/IGVFDO6607QZPA/",
116            "accession": "IGVFDO6607QZPA",
117            "aliases": [
118                "ali-mortazavi:050_NZOJ_10F"
119            ],
120            "sex": "female",
121            "status": "released",
122            "strain_background": "NZO/H1LtJ (NZO)",
123            "taxa": "Mus musculus"
124        },
125        {
126            "@id": "/rodent-donors/IGVFDO0813DZTW/",
127            "accession": "IGVFDO0813DZTW",
128            "aliases": [
129                "ali-mortazavi:069_NODJ_10M"
130            ],
131            "sex": "male",
132            "status": "released",
133            "strain_background": "NOD/ShiLtJ (NOD)",
134            "taxa": "Mus musculus"
135        },
136        {
137            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
138            "accession": "IGVFDO4469VYEZ",
139            "aliases": [
140                "ali-mortazavi:073_NODJ_10M"
141            ],
142            "sex": "male",
143            "status": "released",
144            "strain_background": "NOD/ShiLtJ (NOD)",
145            "taxa": "Mus musculus"
146        },
147        {
148            "@id": "/rodent-donors/IGVFDO9560CEGZ/",
149            "accession": "IGVFDO9560CEGZ",
150            "aliases": [
151                "ali-mortazavi:061_WSBJ_10M"
152            ],
153            "sex": "male",
154            "status": "released",
155            "strain_background": "WSB/EiJ (WSB)",
156            "taxa": "Mus musculus"
157        },
158        {
159            "@id": "/rodent-donors/IGVFDO5872DFML/",
160            "accession": "IGVFDO5872DFML",
161            "aliases": [
162                "ali-mortazavi:094_CASTJ_10F"
163            ],
164            "sex": "female",
165            "status": "released",
166            "strain_background": "CAST/EiJ (CAST)",
167            "taxa": "Mus musculus"
168        },
169        {
170            "@id": "/rodent-donors/IGVFDO6112GRYR/",
171            "accession": "IGVFDO6112GRYR",
172            "aliases": [
173                "ali-mortazavi:059_WSBJ_10M"
174            ],
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176            "status": "released",
177            "strain_background": "WSB/EiJ (WSB)",
178            "taxa": "Mus musculus"
179        },
180        {
181            "@id": "/rodent-donors/IGVFDO0624KKTV/",
182            "accession": "IGVFDO0624KKTV",
183            "aliases": [
184                "ali-mortazavi:030_AJ_10F"
185            ],
186            "sex": "female",
187            "status": "released",
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189            "taxa": "Mus musculus"
190        },
191        {
192            "@id": "/rodent-donors/IGVFDO2753JGYS/",
193            "accession": "IGVFDO2753JGYS",
194            "aliases": [
195                "ali-mortazavi:095_CASTJ_10M"
196            ],
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198            "status": "released",
199            "strain_background": "CAST/EiJ (CAST)",
200            "taxa": "Mus musculus"
201        },
202        {
203            "@id": "/rodent-donors/IGVFDO9374WXKK/",
204            "accession": "IGVFDO9374WXKK",
205            "aliases": [
206                "ali-mortazavi:028_AJ_10F"
207            ],
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209            "status": "released",
210            "strain_background": "A/J (AJ)",
211            "taxa": "Mus musculus"
212        },
213        {
214            "@id": "/rodent-donors/IGVFDO7951JDSP/",
215            "accession": "IGVFDO7951JDSP",
216            "aliases": [
217                "ali-mortazavi:026_AJ_10F"
218            ],
219            "sex": "female",
220            "status": "released",
221            "strain_background": "A/J (AJ)",
222            "taxa": "Mus musculus"
223        },
224        {
225            "@id": "/rodent-donors/IGVFDO1643VEDI/",
226            "accession": "IGVFDO1643VEDI",
227            "aliases": [
228                "ali-mortazavi:019_B6J_10M"
229            ],
230            "sex": "male",
231            "status": "released",
232            "strain_background": "C57BL/6J (B6)",
233            "taxa": "Mus musculus"
234        },
235        {
236            "@id": "/rodent-donors/IGVFDO8904OIIT/",
237            "accession": "IGVFDO8904OIIT",
238            "aliases": [
239                "ali-mortazavi:044_129S1J_10F"
240            ],
241            "sex": "female",
242            "status": "released",
243            "strain_background": "129S1/SvImJ (129)",
244            "taxa": "Mus musculus"
245        },
246        {
247            "@id": "/rodent-donors/IGVFDO6219LVKW/",
248            "accession": "IGVFDO6219LVKW",
249            "aliases": [
250                "ali-mortazavi:032_AJ_10F"
251            ],
252            "sex": "female",
253            "status": "released",
254            "strain_background": "A/J (AJ)",
255            "taxa": "Mus musculus"
256        },
257        {
258            "@id": "/rodent-donors/IGVFDO5258MBVH/",
259            "accession": "IGVFDO5258MBVH",
260            "aliases": [
261                "ali-mortazavi:040_129S1J_10F"
262            ],
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264            "status": "released",
265            "strain_background": "129S1/SvImJ (129)",
266            "taxa": "Mus musculus"
267        },
268        {
269            "@id": "/rodent-donors/IGVFDO0696DMIA/",
270            "accession": "IGVFDO0696DMIA",
271            "aliases": [
272                "ali-mortazavi:057_WSBJ_10M"
273            ],
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275            "status": "released",
276            "strain_background": "WSB/EiJ (WSB)",
277            "taxa": "Mus musculus"
278        },
279        {
280            "@id": "/rodent-donors/IGVFDO7062NBTQ/",
281            "accession": "IGVFDO7062NBTQ",
282            "aliases": [
283                "ali-mortazavi:079_PWKJ_10M"
284            ],
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286            "status": "released",
287            "strain_background": "PWK/PhJ (PWK)",
288            "taxa": "Mus musculus"
289        },
290        {
291            "@id": "/rodent-donors/IGVFDO0026YRCR/",
292            "accession": "IGVFDO0026YRCR",
293            "aliases": [
294                "ali-mortazavi:018_B6J_10F"
295            ],
296            "sex": "female",
297            "status": "released",
298            "strain_background": "C57BL/6J (B6)",
299            "taxa": "Mus musculus"
300        },
301        {
302            "@id": "/rodent-donors/IGVFDO0751WQHI/",
303            "accession": "IGVFDO0751WQHI",
304            "aliases": [
305                "ali-mortazavi:080_PWKJ_10F"
306            ],
307            "sex": "female",
308            "status": "released",
309            "strain_background": "PWK/PhJ (PWK)",
310            "taxa": "Mus musculus"
311        },
312        {
313            "@id": "/rodent-donors/IGVFDO7254QNQZ/",
314            "accession": "IGVFDO7254QNQZ",
315            "aliases": [
316                "ali-mortazavi:031_AJ_10M"
317            ],
318            "sex": "male",
319            "status": "released",
320            "strain_background": "A/J (AJ)",
321            "taxa": "Mus musculus"
322        },
323        {
324            "@id": "/rodent-donors/IGVFDO7007WBAX/",
325            "accession": "IGVFDO7007WBAX",
326            "aliases": [
327                "ali-mortazavi:016_B6J_10F"
328            ],
329            "sex": "female",
330            "status": "released",
331            "strain_background": "C57BL/6J (B6)",
332            "taxa": "Mus musculus"
333        },
334        {
335            "@id": "/rodent-donors/IGVFDO9202WGJZ/",
336            "accession": "IGVFDO9202WGJZ",
337            "aliases": [
338                "ali-mortazavi:085_PWKJ_10M"
339            ],
340            "sex": "male",
341            "status": "released",
342            "strain_background": "PWK/PhJ (PWK)",
343            "taxa": "Mus musculus"
344        },
345        {
346            "@id": "/rodent-donors/IGVFDO5539RLXJ/",
347            "accession": "IGVFDO5539RLXJ",
348            "aliases": [
349                "ali-mortazavi:029_AJ_10M"
350            ],
351            "sex": "male",
352            "status": "released",
353            "strain_background": "A/J (AJ)",
354            "taxa": "Mus musculus"
355        },
356        {
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358            "accession": "IGVFDO3436ZMLY",
359            "aliases": [
360                "ali-mortazavi:091_CASTJ_10M"
361            ],
362            "sex": "male",
363            "status": "released",
364            "strain_background": "CAST/EiJ (CAST)",
365            "taxa": "Mus musculus"
366        },
367        {
368            "@id": "/rodent-donors/IGVFDO8958JQIY/",
369            "accession": "IGVFDO8958JQIY",
370            "aliases": [
371                "ali-mortazavi:047_NZOJ_10M"
372            ],
373            "sex": "male",
374            "status": "released",
375            "strain_background": "NZO/H1LtJ (NZO)",
376            "taxa": "Mus musculus"
377        },
378        {
379            "@id": "/rodent-donors/IGVFDO7610XXRR/",
380            "accession": "IGVFDO7610XXRR",
381            "aliases": [
382                "ali-mortazavi:072_NODJ_10F"
383            ],
384            "sex": "female",
385            "status": "released",
386            "strain_background": "NOD/ShiLtJ (NOD)",
387            "taxa": "Mus musculus"
388        },
389        {
390            "@id": "/rodent-donors/IGVFDO7255VZBN/",
391            "accession": "IGVFDO7255VZBN",
392            "aliases": [
393                "ali-mortazavi:062_WSBJ_10F"
394            ],
395            "sex": "female",
396            "status": "released",
397            "strain_background": "WSB/EiJ (WSB)",
398            "taxa": "Mus musculus"
399        },
400        {
401            "@id": "/rodent-donors/IGVFDO5177QEWF/",
402            "accession": "IGVFDO5177QEWF",
403            "aliases": [
404                "ali-mortazavi:063_WSBJ_10M"
405            ],
406            "sex": "male",
407            "status": "released",
408            "strain_background": "WSB/EiJ (WSB)",
409            "taxa": "Mus musculus"
410        },
411        {
412            "@id": "/rodent-donors/IGVFDO5183UZGS/",
413            "accession": "IGVFDO5183UZGS",
414            "aliases": [
415                "ali-mortazavi:021_B6J_10M"
416            ],
417            "sex": "male",
418            "status": "released",
419            "strain_background": "C57BL/6J (B6)",
420            "taxa": "Mus musculus"
421        },
422        {
423            "@id": "/rodent-donors/IGVFDO8152XDDC/",
424            "accession": "IGVFDO8152XDDC",
425            "aliases": [
426                "ali-mortazavi:090_CASTJ_10F"
427            ],
428            "sex": "female",
429            "status": "released",
430            "strain_background": "CAST/EiJ (CAST)",
431            "taxa": "Mus musculus"
432        },
433        {
434            "@id": "/rodent-donors/IGVFDO5085MJSP/",
435            "accession": "IGVFDO5085MJSP",
436            "aliases": [
437                "ali-mortazavi:048_NZOJ_10F"
438            ],
439            "sex": "female",
440            "status": "released",
441            "strain_background": "NZO/H1LtJ (NZO)",
442            "taxa": "Mus musculus"
443        },
444        {
445            "@id": "/rodent-donors/IGVFDO3640WUBU/",
446            "accession": "IGVFDO3640WUBU",
447            "aliases": [
448                "ali-mortazavi:066_NODJ_10F"
449            ],
450            "sex": "female",
451            "status": "released",
452            "strain_background": "NOD/ShiLtJ (NOD)",
453            "taxa": "Mus musculus"
454        },
455        {
456            "@id": "/rodent-donors/IGVFDO0430HQIU/",
457            "accession": "IGVFDO0430HQIU",
458            "aliases": [
459                "ali-mortazavi:041_129S1J_10M"
460            ],
461            "sex": "male",
462            "status": "released",
463            "strain_background": "129S1/SvImJ (129)",
464            "taxa": "Mus musculus"
465        },
466        {
467            "@id": "/rodent-donors/IGVFDO4707SGWM/",
468            "accession": "IGVFDO4707SGWM",
469            "aliases": [
470                "ali-mortazavi:051_NZOJ_10M"
471            ],
472            "sex": "male",
473            "status": "released",
474            "strain_background": "NZO/H1LtJ (NZO)",
475            "taxa": "Mus musculus"
476        },
477        {
478            "@id": "/rodent-donors/IGVFDO4725SNCJ/",
479            "accession": "IGVFDO4725SNCJ",
480            "aliases": [
481                "ali-mortazavi:017_B6J_10M"
482            ],
483            "sex": "male",
484            "status": "released",
485            "strain_background": "C57BL/6J (B6)",
486            "taxa": "Mus musculus"
487        },
488        {
489            "@id": "/rodent-donors/IGVFDO1477BPVO/",
490            "accession": "IGVFDO1477BPVO",
491            "aliases": [
492                "ali-mortazavi:088_CASTJ_10F"
493            ],
494            "sex": "female",
495            "status": "released",
496            "strain_background": "CAST/EiJ (CAST)",
497            "taxa": "Mus musculus"
498        },
499        {
500            "@id": "/rodent-donors/IGVFDO1452VDIT/",
501            "accession": "IGVFDO1452VDIT",
502            "aliases": [
503                "ali-mortazavi:035_AJ_10M"
504            ],
505            "sex": "male",
506            "status": "released",
507            "strain_background": "A/J (AJ)",
508            "taxa": "Mus musculus"
509        },
510        {
511            "@id": "/rodent-donors/IGVFDO3662UKFW/",
512            "accession": "IGVFDO3662UKFW",
513            "aliases": [
514                "ali-mortazavi:087_CASTJ_10M"
515            ],
516            "sex": "male",
517            "status": "released",
518            "strain_background": "CAST/EiJ (CAST)",
519            "taxa": "Mus musculus"
520        },
521        {
522            "@id": "/rodent-donors/IGVFDO5523UFUN/",
523            "accession": "IGVFDO5523UFUN",
524            "aliases": [
525                "ali-mortazavi:070_NODJ_10F"
526            ],
527            "sex": "female",
528            "status": "released",
529            "strain_background": "NOD/ShiLtJ (NOD)",
530            "taxa": "Mus musculus"
531        },
532        {
533            "@id": "/rodent-donors/IGVFDO5737FRWD/",
534            "accession": "IGVFDO5737FRWD",
535            "aliases": [
536                "ali-mortazavi:081_PWKJ_10M"
537            ],
538            "sex": "male",
539            "status": "released",
540            "strain_background": "PWK/PhJ (PWK)",
541            "taxa": "Mus musculus"
542        },
543        {
544            "@id": "/rodent-donors/IGVFDO6614NNPY/",
545            "accession": "IGVFDO6614NNPY",
546            "aliases": [
547                "ali-mortazavi:089_CASTJ_10M"
548            ],
549            "sex": "male",
550            "status": "released",
551            "strain_background": "CAST/EiJ (CAST)",
552            "taxa": "Mus musculus"
553        },
554        {
555            "@id": "/rodent-donors/IGVFDO6066JIEJ/",
556            "accession": "IGVFDO6066JIEJ",
557            "aliases": [
558                "ali-mortazavi:043_129S1J_10M"
559            ],
560            "sex": "male",
561            "status": "released",
562            "strain_background": "129S1/SvImJ (129)",
563            "taxa": "Mus musculus"
564        },
565        {
566            "@id": "/rodent-donors/IGVFDO9340WGNV/",
567            "accession": "IGVFDO9340WGNV",
568            "aliases": [
569                "ali-mortazavi:037_129S1J_10M"
570            ],
571            "sex": "male",
572            "status": "released",
573            "strain_background": "129S1/SvImJ (129)",
574            "taxa": "Mus musculus"
575        },
576        {
577            "@id": "/rodent-donors/IGVFDO9890MXGN/",
578            "accession": "IGVFDO9890MXGN",
579            "aliases": [
580                "ali-mortazavi:068_NODJ_10F"
581            ],
582            "sex": "female",
583            "status": "released",
584            "strain_background": "NOD/ShiLtJ (NOD)",
585            "taxa": "Mus musculus"
586        },
587        {
588            "@id": "/rodent-donors/IGVFDO2319OUEC/",
589            "accession": "IGVFDO2319OUEC",
590            "aliases": [
591                "ali-mortazavi:045_129S1J_10M"
592            ],
593            "sex": "male",
594            "status": "released",
595            "strain_background": "129S1/SvImJ (129)",
596            "taxa": "Mus musculus"
597        },
598        {
599            "@id": "/rodent-donors/IGVFDO4788BIQB/",
600            "accession": "IGVFDO4788BIQB",
601            "aliases": [
602                "ali-mortazavi:020_B6J_10F"
603            ],
604            "sex": "female",
605            "status": "released",
606            "strain_background": "C57BL/6J (B6)",
607            "taxa": "Mus musculus"
608        },
609        {
610            "@id": "/rodent-donors/IGVFDO0681EHNP/",
611            "accession": "IGVFDO0681EHNP",
612            "aliases": [
613                "ali-mortazavi:052_NZOJ_10F"
614            ],
615            "sex": "female",
616            "status": "released",
617            "strain_background": "NZO/H1LtJ (NZO)",
618            "taxa": "Mus musculus"
619        },
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1094                "term_name": "Illumina NovaSeq 6000"
1095            },
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1099        },
1100        {
1101            "@id": "/sequence-files/IGVFFI4753GFDF/",
1102            "accession": "IGVFFI4753GFDF",
1103            "content_type": "reads",
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1111            "sequencing_platform": {
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1114                "term_name": "Illumina NovaSeq 6000"
1115            },
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1119        },
1120        {
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1130            "status": "released",
1131            "upload_status": "validated"
1132        },
1133        {
1134            "@id": "/configuration-files/IGVFFI0135GJIJ/",
1135            "accession": "IGVFFI0135GJIJ",
1136            "content_type": "seqspec",
1137            "creation_timestamp": "2024-09-18T17:30:39.861731+00:00",
1138            "file_format": "yaml",
1139            "file_size": 1352,
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1141            "md5sum": "3a5fee09d61f9158e42465d2e8f74ff4",
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1143            "status": "released",
1144            "upload_status": "validated"
1145        },
1146        {
1147            "@id": "/configuration-files/IGVFFI0527AZHR/",
1148            "accession": "IGVFFI0527AZHR",
1149            "content_type": "seqspec",
1150            "creation_timestamp": "2024-09-18T17:30:42.473058+00:00",
1151            "file_format": "yaml",
1152            "file_size": 1350,
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1154            "md5sum": "0a546011c1e89a57db47a57d2c82403f",
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1156            "status": "released",
1157            "upload_status": "validated"
1158        },
1159        {
1160            "@id": "/configuration-files/IGVFFI9172PQOT/",
1161            "accession": "IGVFFI9172PQOT",
1162            "content_type": "seqspec",
1163            "creation_timestamp": "2024-09-18T17:30:37.300575+00:00",
1164            "file_format": "yaml",
1165            "file_size": 1353,
1166            "href": "/configuration-files/IGVFFI9172PQOT/@@download/IGVFFI9172PQOT.yaml.gz",
1167            "md5sum": "67f4039e375a38a66cee3d2e348aa578",
1168            "s3_uri": "s3://igvf-files/2024/09/18/6df27ee0-3033-4683-9df2-cc3ca7eedb5c/IGVFFI9172PQOT.yaml.gz",
1169            "status": "released",
1170            "upload_status": "validated"
1171        },
1172        {
1173            "@id": "/configuration-files/IGVFFI4845QOJM/",
1174            "accession": "IGVFFI4845QOJM",
1175            "content_type": "seqspec",
1176            "creation_timestamp": "2024-09-18T17:30:41.025453+00:00",
1177            "file_format": "yaml",
1178            "file_size": 1352,
1179            "href": "/configuration-files/IGVFFI4845QOJM/@@download/IGVFFI4845QOJM.yaml.gz",
1180            "md5sum": "d7fa4f9f1f2faf24457a2fb4ba67da02",
1181            "s3_uri": "s3://igvf-files/2024/09/18/83b97037-b7bd-4877-be8f-cf594708735f/IGVFFI4845QOJM.yaml.gz",
1182            "status": "released",
1183            "upload_status": "validated"
1184        },
1185        {
1186            "@id": "/configuration-files/IGVFFI5876BLTT/",
1187            "accession": "IGVFFI5876BLTT",
1188            "content_type": "seqspec",
1189            "creation_timestamp": "2024-09-18T17:30:35.967305+00:00",
1190            "file_format": "yaml",
1191            "file_size": 1353,
1192            "href": "/configuration-files/IGVFFI5876BLTT/@@download/IGVFFI5876BLTT.yaml.gz",
1193            "md5sum": "d42647d6547ebeb8ee4c9c908c7ff9a0",
1194            "s3_uri": "s3://igvf-files/2024/09/18/1f8f6bce-349f-44be-84cb-1c6ed81843f1/IGVFFI5876BLTT.yaml.gz",
1195            "status": "released",
1196            "upload_status": "validated"
1197        },
1198        {
1199            "@id": "/configuration-files/IGVFFI5482KOVO/",
1200            "accession": "IGVFFI5482KOVO",
1201            "content_type": "seqspec",
1202            "creation_timestamp": "2024-09-18T17:30:38.667311+00:00",
1203            "file_format": "yaml",
1204            "file_size": 1353,
1205            "href": "/configuration-files/IGVFFI5482KOVO/@@download/IGVFFI5482KOVO.yaml.gz",
1206            "md5sum": "08a32762bd807ffa158df125f156e4e0",
1207            "s3_uri": "s3://igvf-files/2024/09/18/6e397b63-54db-4bcf-b78f-cbeb926cbcc3/IGVFFI5482KOVO.yaml.gz",
1208            "status": "released",
1209            "upload_status": "validated"
1210        },
1211        {
1212            "@id": "/configuration-files/IGVFFI3025TTCA/",
1213            "accession": "IGVFFI3025TTCA",
1214            "content_type": "seqspec",
1215            "creation_timestamp": "2024-09-18T17:30:44.904691+00:00",
1216            "file_format": "yaml",
1217            "file_size": 1353,
1218            "href": "/configuration-files/IGVFFI3025TTCA/@@download/IGVFFI3025TTCA.yaml.gz",
1219            "md5sum": "054914c0d6cdde5a46cc7d80d8690a82",
1220            "s3_uri": "s3://igvf-files/2024/09/18/bfbe3644-f334-4736-911d-6463803258e4/IGVFFI3025TTCA.yaml.gz",
1221            "status": "released",
1222            "upload_status": "validated"
1223        }
1224    ],
1225    "input_for": [
1226        "/analysis-sets/IGVFDS2150INIT/"
1227    ],
1228    "lab": {
1229        "@id": "/labs/ali-mortazavi/",
1230        "title": "Ali Mortazavi, UCI"
1231    },
1232    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1233    "onlist_files": [
1234        "/tabular-files/IGVFFI2591OFQO/",
1235        "/tabular-files/IGVFFI1138MCVX/"
1236    ],
1237    "onlist_method": "multi",
1238    "preferred_assay_title": "Parse SPLiT-seq",
1239    "protocols": [
1240        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
1241        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
1242        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1243        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
1244    ],
1245    "release_timestamp": "2025-04-19T01:12:53.752290+00:00",
1246    "samples": [
1247        {
1248            "@id": "/multiplexed-samples/IGVFSM1137BDHM/",
1249            "@type": [
1250                "MultiplexedSample",
1251                "Sample",
1252                "Item"
1253            ],
1254            "accession": "IGVFSM1137BDHM",
1255            "aliases": [
1256                "ali-mortazavi:subpool_009_67N"
1257            ],
1258            "cellular_sub_pool": "009_67N",
1259            "classifications": [
1260                "tissue",
1261                "multiplexed sample"
1262            ],
1263            "disease_terms": [],
1264            "institutional_certificates": [],
1265            "modifications": [],
1266            "sample_terms": [
1267                {
1268                    "@id": "/sample-terms/UBERON_0002113/",
1269                    "@type": [
1270                        "SampleTerm",
1271                        "OntologyTerm",
1272                        "Item"
1273                    ],
1274                    "status": "released",
1275                    "summary": "kidney",
1276                    "term_name": "kidney"
1277                },
1278                {
1279                    "@id": "/sample-terms/UBERON_0002369/",
1280                    "@type": [
1281                        "SampleTerm",
1282                        "OntologyTerm",
1283                        "Item"
1284                    ],
1285                    "status": "released",
1286                    "summary": "adrenal gland",
1287                    "term_name": "adrenal gland"
1288                }
1289            ],
1290            "status": "released",
1291            "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
1292            "taxa": "Mus musculus",
1293            "treatments": []
1294        }
1295    ],
1296    "schema_version": "26",
1297    "sequencing_library_types": [
1298        "mRNA enriched"
1299    ],
1300    "status": "released",
1301    "strand_specificity": "5 prime to 3 prime",
1302    "submitted_by": {
1303        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
1304        "title": "Diane Trout"
1305    },
1306    "submitted_files_timestamp": "2023-10-13T09:55:58.855549+00:00",
1307    "summary": "Parse SPLiT-seq",
1308    "uuid": "71463d67-1b75-4824-8e78-3baec59ddb34"
1309}