IGVFDS7834BXBN

{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS7834BXBN/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS7834BXBN",
    "aliases": [
        "gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW277"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003660/",
        "status": "released",
        "term_name": "in vitro CRISPR screen using single-cell RNA-seq"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing sequencing kit",
                "detail": "Auxiliary set [IGVFDS6231TYIS](/auxiliary-sets/IGVFDS6231TYIS/) has sequence file(s) [IGVFFI3619XUDY](/sequence-files/IGVFFI3619XUDY/), [IGVFFI8623EMUX](/sequence-files/IGVFFI8623EMUX/), [IGVFFI7242OHQZ](/sequence-files/IGVFFI7242OHQZ/), [IGVFFI3194VIYW](/sequence-files/IGVFFI3194VIYW/), [IGVFFI6434GRPO](/sequence-files/IGVFFI6434GRPO/), [IGVFFI5716PBAK](/sequence-files/IGVFFI5716PBAK/), [IGVFFI2229JWQR](/sequence-files/IGVFFI2229JWQR/), [IGVFFI7413XGHD](/sequence-files/IGVFFI7413XGHD/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/auxiliary-sets/IGVFDS6231TYIS/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Auxiliary set [IGVFDS6231TYIS](/auxiliary-sets/IGVFDS6231TYIS/) has sequence file(s): [IGVFFI3619XUDY](/sequence-files/IGVFFI3619XUDY/), [IGVFFI8623EMUX](/sequence-files/IGVFFI8623EMUX/), [IGVFFI7242OHQZ](/sequence-files/IGVFFI7242OHQZ/), [IGVFFI3194VIYW](/sequence-files/IGVFFI3194VIYW/), [IGVFFI6434GRPO](/sequence-files/IGVFFI6434GRPO/), [IGVFFI5716PBAK](/sequence-files/IGVFFI5716PBAK/), [IGVFFI2229JWQR](/sequence-files/IGVFFI2229JWQR/), [IGVFFI7413XGHD](/sequence-files/IGVFFI7413XGHD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/auxiliary-sets/IGVFDS6231TYIS/"
            },
            {
                "category": "missing sequencing kit",
                "detail": "Auxiliary set [IGVFDS8280AMDA](/auxiliary-sets/IGVFDS8280AMDA/) has sequence file(s) [IGVFFI6637VQNC](/sequence-files/IGVFFI6637VQNC/), [IGVFFI9225ZAYG](/sequence-files/IGVFFI9225ZAYG/), [IGVFFI7205PTPJ](/sequence-files/IGVFFI7205PTPJ/), [IGVFFI0105QRUB](/sequence-files/IGVFFI0105QRUB/), [IGVFFI5482SCRU](/sequence-files/IGVFFI5482SCRU/), [IGVFFI4436NITM](/sequence-files/IGVFFI4436NITM/), [IGVFFI5870FWJX](/sequence-files/IGVFFI5870FWJX/), [IGVFFI4422CQQU](/sequence-files/IGVFFI4422CQQU/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/auxiliary-sets/IGVFDS8280AMDA/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Auxiliary set [IGVFDS8280AMDA](/auxiliary-sets/IGVFDS8280AMDA/) has sequence file(s): [IGVFFI6637VQNC](/sequence-files/IGVFFI6637VQNC/), [IGVFFI9225ZAYG](/sequence-files/IGVFFI9225ZAYG/), [IGVFFI7205PTPJ](/sequence-files/IGVFFI7205PTPJ/), [IGVFFI0105QRUB](/sequence-files/IGVFFI0105QRUB/), [IGVFFI5482SCRU](/sequence-files/IGVFFI5482SCRU/), [IGVFFI4436NITM](/sequence-files/IGVFFI4436NITM/), [IGVFFI5870FWJX](/sequence-files/IGVFFI5870FWJX/), [IGVFFI4422CQQU](/sequence-files/IGVFFI4422CQQU/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/auxiliary-sets/IGVFDS8280AMDA/"
            },
            {
                "category": "missing sequencing kit",
                "detail": "Measurement set [IGVFDS7834BXBN](/measurement-sets/IGVFDS7834BXBN/) has sequence file(s) [IGVFFI2869RZHP](/sequence-files/IGVFFI2869RZHP/), [IGVFFI9035WZGH](/sequence-files/IGVFFI9035WZGH/), [IGVFFI0694FGVK](/sequence-files/IGVFFI0694FGVK/), [IGVFFI4639VVSI](/sequence-files/IGVFFI4639VVSI/), [IGVFFI0927MZKK](/sequence-files/IGVFFI0927MZKK/), [IGVFFI7293GNLQ](/sequence-files/IGVFFI7293GNLQ/), [IGVFFI6030TTPJ](/sequence-files/IGVFFI6030TTPJ/), [IGVFFI3079WTCT](/sequence-files/IGVFFI3079WTCT/), [IGVFFI8109YDPT](/sequence-files/IGVFFI8109YDPT/), [IGVFFI3915NDQI](/sequence-files/IGVFFI3915NDQI/), [IGVFFI7818BGAF](/sequence-files/IGVFFI7818BGAF/), [IGVFFI2196CSLH](/sequence-files/IGVFFI2196CSLH/), [IGVFFI8923KPZG](/sequence-files/IGVFFI8923KPZG/), [IGVFFI1804NWOX](/sequence-files/IGVFFI1804NWOX/), [IGVFFI3609NOVK](/sequence-files/IGVFFI3609NOVK/), [IGVFFI8959OAMJ](/sequence-files/IGVFFI8959OAMJ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/measurement-sets/IGVFDS7834BXBN/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS7834BXBN](/measurement-sets/IGVFDS7834BXBN/) has sequence file(s): [IGVFFI2869RZHP](/sequence-files/IGVFFI2869RZHP/), [IGVFFI9035WZGH](/sequence-files/IGVFFI9035WZGH/), [IGVFFI0694FGVK](/sequence-files/IGVFFI0694FGVK/), [IGVFFI4639VVSI](/sequence-files/IGVFFI4639VVSI/), [IGVFFI0927MZKK](/sequence-files/IGVFFI0927MZKK/), [IGVFFI7293GNLQ](/sequence-files/IGVFFI7293GNLQ/), [IGVFFI6030TTPJ](/sequence-files/IGVFFI6030TTPJ/), [IGVFFI3079WTCT](/sequence-files/IGVFFI3079WTCT/), [IGVFFI8109YDPT](/sequence-files/IGVFFI8109YDPT/), [IGVFFI3915NDQI](/sequence-files/IGVFFI3915NDQI/), [IGVFFI7818BGAF](/sequence-files/IGVFFI7818BGAF/), [IGVFFI2196CSLH](/sequence-files/IGVFFI2196CSLH/), [IGVFFI8923KPZG](/sequence-files/IGVFFI8923KPZG/), [IGVFFI1804NWOX](/sequence-files/IGVFFI1804NWOX/), [IGVFFI3609NOVK](/sequence-files/IGVFFI3609NOVK/), [IGVFFI8959OAMJ](/sequence-files/IGVFFI8959OAMJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS7834BXBN/"
            }
        ]
    },
    "auxiliary_sets": [
        {
            "@id": "/auxiliary-sets/IGVFDS8280AMDA/",
            "accession": "IGVFDS8280AMDA",
            "aliases": [
                "gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_sgRNA_LW277"
            ],
            "file_set_type": "gRNA sequencing",
            "status": "preview"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS6231TYIS/",
            "accession": "IGVFDS6231TYIS",
            "aliases": [
                "gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_HTO_LW277"
            ],
            "file_set_type": "cell hashing barcode sequencing",
            "status": "preview"
        }
    ],
    "award": {
        "@id": "/awards/HG011996/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/95d84f03-8ce0-489c-a755-f33ced139c5d/",
            "title": "Gary Hon"
        },
        "title": "Multiscale functional characterization of genomic variation in human developmental disorders"
    },
    "control_for": [],
    "creation_timestamp": "2024-02-21T21:07:17.305831+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1756PPKO/",
            "accession": "IGVFDO1756PPKO",
            "aliases": [
                "igvf:donor_of_WTC11"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI2869RZHP/",
            "accession": "IGVFFI2869RZHP",
            "aliases": [
                "gary-hon:LW277_1_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-03-01T17:07:50.602314+00:00",
            "file_format": "fastq",
            "file_size": 258302896,
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            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0010963/",
                "status": "released",
                "term_name": "Illumina NextSeq 2000"
            },
            "status": "preview",
            "submitted_file_name": "/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-05-McDermott-NextSeq.10X/2023-10-05/outs/fastq_path/AAC7VLGHV/LW277_S15_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9035WZGH/",
            "accession": "IGVFFI9035WZGH",
            "aliases": [
                "gary-hon:LW277_1_R2"
            ],
            "content_type": "reads",
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            "creation_timestamp": "2024-03-01T17:07:56.510480+00:00",
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            },
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            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0694FGVK/",
            "accession": "IGVFFI0694FGVK",
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                "gary-hon:LW277_1_I1"
            ],
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            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4639VVSI/",
            "accession": "IGVFFI4639VVSI",
            "aliases": [
                "gary-hon:LW277_1_I2"
            ],
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            "creation_timestamp": "2024-03-01T17:07:46.095112+00:00",
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            },
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        },
        {
            "@id": "/sequence-files/IGVFFI0927MZKK/",
            "accession": "IGVFFI0927MZKK",
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                "gary-hon:LW277_2_I1"
            ],
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            },
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        },
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            "@id": "/sequence-files/IGVFFI7293GNLQ/",
            "accession": "IGVFFI7293GNLQ",
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            ],
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            },
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        },
        {
            "@id": "/sequence-files/IGVFFI6030TTPJ/",
            "accession": "IGVFFI6030TTPJ",
            "aliases": [
                "gary-hon:LW277_2_R1"
            ],
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            },
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        },
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            "@id": "/sequence-files/IGVFFI3079WTCT/",
            "accession": "IGVFFI3079WTCT",
            "aliases": [
                "gary-hon:LW277_2_R2"
            ],
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            "@id": "/sequence-files/IGVFFI8109YDPT/",
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            "@id": "/sequence-files/IGVFFI3915NDQI/",
            "accession": "IGVFFI3915NDQI",
            "aliases": [
                "gary-hon:LW277_1_I1_2"
            ],
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        },
        {
            "@id": "/sequence-files/IGVFFI7818BGAF/",
            "accession": "IGVFFI7818BGAF",
            "aliases": [
                "gary-hon:LW277_2_R1_2"
            ],
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            "creation_timestamp": "2024-03-01T18:44:04.967011+00:00",
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            },
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            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2196CSLH/",
            "accession": "IGVFFI2196CSLH",
            "aliases": [
                "gary-hon:LW277_2_R2_2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-03-01T18:44:38.968616+00:00",
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