{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7814BDIB/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7814BDIB",
"aliases": [
"ali-mortazavi:004_67N_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS7814BDIB](/measurement-sets/IGVFDS7814BDIB/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS7814BDIB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7814BDIB](/measurement-sets/IGVFDS7814BDIB/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7814BDIB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7814BDIB](/measurement-sets/IGVFDS7814BDIB/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7814BDIB/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM9331UHES](/multiplexed-samples/IGVFSM9331UHES/) has in progress subobject tabular file [IGVFFI6237SLBZ](/tabular-files/IGVFFI6237SLBZ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9331UHES/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM9331UHES](/multiplexed-samples/IGVFSM9331UHES/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM9331UHES/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-05T18:13:33.208371+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI7116EAFT/",
"accession": "IGVFFI7116EAFT",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:52:29.672686+00:00",
"file_format": "fastq",
"file_size": 4922295395,
"href": "/sequence-files/IGVFFI7116EAFT/@@download/IGVFFI7116EAFT.fastq.gz",
"md5sum": "346f1a54be26735545ff691037fc385d",
"s3_uri": "s3://igvf-files/2023/10/06/8446d24e-54c5-43e2-9ffc-bb5f3fe7d228/IGVFFI7116EAFT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7419FMGK/",
"accession": "IGVFFI7419FMGK",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:54:32.645842+00:00",
"file_format": "fastq",
"file_size": 10003854230,
"href": "/sequence-files/IGVFFI7419FMGK/@@download/IGVFFI7419FMGK.fastq.gz",
"md5sum": "a25eb265531fac082de597c20106b568",
"s3_uri": "s3://igvf-files/2023/10/06/34de4198-a1f4-4b7d-993d-70743f3fba46/IGVFFI7419FMGK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0720BPXV/",
"accession": "IGVFFI0720BPXV",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:05:01.995321+00:00",
"file_format": "fastq",
"file_size": 4847438943,
"href": "/sequence-files/IGVFFI0720BPXV/@@download/IGVFFI0720BPXV.fastq.gz",
"md5sum": "f4fd6f1dc375d214bde6361ef2d4eed4",
"s3_uri": "s3://igvf-files/2023/10/06/2db78b37-abc7-4888-ab93-90340878142c/IGVFFI0720BPXV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9796ZZNR/",
"accession": "IGVFFI9796ZZNR",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:07:01.719582+00:00",
"file_format": "fastq",
"file_size": 9279258091,
"href": "/sequence-files/IGVFFI9796ZZNR/@@download/IGVFFI9796ZZNR.fastq.gz",
"md5sum": "40c28dcc856213ba1144603e7f243caf",
"s3_uri": "s3://igvf-files/2023/10/06/7e6ae219-8d49-46cd-8f89-f9300179390f/IGVFFI9796ZZNR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9684TAYY/",
"accession": "IGVFFI9684TAYY",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:01:00.838492+00:00",
"file_format": "fastq",
"file_size": 9743592580,
"href": "/sequence-files/IGVFFI9684TAYY/@@download/IGVFFI9684TAYY.fastq.gz",
"md5sum": "7583b04d4ec7cdeec06e270b61219a8a",
"s3_uri": "s3://igvf-files/2023/10/06/9a028483-1aa0-4c7b-af59-49a7a84a8444/IGVFFI9684TAYY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3483DBPD/",
"accession": "IGVFFI3483DBPD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:19:03.021518+00:00",
"file_format": "fastq",
"file_size": 9257239714,
"href": "/sequence-files/IGVFFI3483DBPD/@@download/IGVFFI3483DBPD.fastq.gz",
"md5sum": "bc1726e8b61d5ab1b6ed56c99d21d87c",
"s3_uri": "s3://igvf-files/2023/10/06/48dbe8f1-883f-417d-b7ba-d9ae7a88bf2f/IGVFFI3483DBPD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1221HBMP/",
"accession": "IGVFFI1221HBMP",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:42:09.936450+00:00",
"file_format": "fastq",
"file_size": 10058206766,
"href": "/sequence-files/IGVFFI1221HBMP/@@download/IGVFFI1221HBMP.fastq.gz",
"md5sum": "6c7ac6397613436ba4195472273c49d2",
"s3_uri": "s3://igvf-files/2023/10/06/7fee7a67-1861-405c-b06c-e0bb33b29e21/IGVFFI1221HBMP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8330YRSM/",
"accession": "IGVFFI8330YRSM",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:13:05.858428+00:00",
"file_format": "fastq",
"file_size": 9356837231,
"href": "/sequence-files/IGVFFI8330YRSM/@@download/IGVFFI8330YRSM.fastq.gz",
"md5sum": "42de699134e0954ee2aef39f81db3a70",
"s3_uri": "s3://igvf-files/2023/10/06/3e5e18ef-c25f-41b5-b097-1a8957681cc0/IGVFFI8330YRSM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5586TGPT/",
"accession": "IGVFFI5586TGPT",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:46:13.984374+00:00",
"file_format": "fastq",
"file_size": 4965770330,
"href": "/sequence-files/IGVFFI5586TGPT/@@download/IGVFFI5586TGPT.fastq.gz",
"md5sum": "72478d810741c82e8b00685bc0a6f770",
"s3_uri": "s3://igvf-files/2023/10/06/4598f24f-92d9-4131-9762-a7e4688336fa/IGVFFI5586TGPT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2561RJSD/",
"accession": "IGVFFI2561RJSD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:22:54.100622+00:00",
"file_format": "fastq",
"file_size": 4770205426,
"href": "/sequence-files/IGVFFI2561RJSD/@@download/IGVFFI2561RJSD.fastq.gz",
"md5sum": "c22a34eae50cd28e319d00a70435dc97",
"s3_uri": "s3://igvf-files/2023/10/06/61f8a676-18c0-4c16-b97b-85c2fde05c8b/IGVFFI2561RJSD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3353NZQO/",
"accession": "IGVFFI3353NZQO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:17:01.561666+00:00",
"file_format": "fastq",
"file_size": 4838707181,
"href": "/sequence-files/IGVFFI3353NZQO/@@download/IGVFFI3353NZQO.fastq.gz",
"md5sum": "4b71d2439ac24617d9ef0d47bcc30ed0",
"s3_uri": "s3://igvf-files/2023/10/06/b1a0801a-19c5-471e-a7e0-0c5206a0a17e/IGVFFI3353NZQO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2841ZARO/",
"accession": "IGVFFI2841ZARO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:28:48.967298+00:00",
"file_format": "fastq",
"file_size": 4776081044,
"href": "/sequence-files/IGVFFI2841ZARO/@@download/IGVFFI2841ZARO.fastq.gz",
"md5sum": "1cc03429039a277e5e92bd8ea44e9809",
"s3_uri": "s3://igvf-files/2023/10/06/1486189b-df2a-4e37-b9ba-e584ee57d9d7/IGVFFI2841ZARO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5947ORGE/",
"accession": "IGVFFI5947ORGE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:48:18.278641+00:00",
"file_format": "fastq",
"file_size": 9949003129,
"href": "/sequence-files/IGVFFI5947ORGE/@@download/IGVFFI5947ORGE.fastq.gz",
"md5sum": "18d5c41cf55d35a46538c1db30fbff6d",
"s3_uri": "s3://igvf-files/2023/10/06/081afa17-acb8-4996-ab12-8ec686f88b67/IGVFFI5947ORGE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6986PXBM/",
"accession": "IGVFFI6986PXBM",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T09:58:49.640942+00:00",
"file_format": "fastq",
"file_size": 4936757083,
"href": "/sequence-files/IGVFFI6986PXBM/@@download/IGVFFI6986PXBM.fastq.gz",
"md5sum": "b2e9d73cb56073ef8a24b157f8aa5b80",
"s3_uri": "s3://igvf-files/2023/10/06/1f12276d-39d2-4b53-b3d3-dcba1203dbe7/IGVFFI6986PXBM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B15_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2302RYYI/",
"accession": "IGVFFI2302RYYI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:10:57.125285+00:00",
"file_format": "fastq",
"file_size": 4813578542,
"href": "/sequence-files/IGVFFI2302RYYI/@@download/IGVFFI2302RYYI.fastq.gz",
"md5sum": "19d94cf2040d89ac14562e373ebaa226",
"s3_uri": "s3://igvf-files/2023/10/06/a64c31bc-d440-45cd-be2b-fe7fe63c4fe0/IGVFFI2302RYYI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3705NYNY/",
"accession": "IGVFFI3705NYNY",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-06T10:24:56.358128+00:00",
"file_format": "fastq",
"file_size": 9254355381,
"href": "/sequence-files/IGVFFI3705NYNY/@@download/IGVFFI3705NYNY.fastq.gz",
"md5sum": "955815f212e9389c30883d501e60d345",
"s3_uri": "s3://igvf-files/2023/10/06/37461266-2966-4f10-9359-4090d8b30b56/IGVFFI3705NYNY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B15_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7974XXAH/",
"accession": "IGVFFI7974XXAH",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:35.605665+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI7974XXAH/@@download/IGVFFI7974XXAH.yaml.gz",
"md5sum": "79e8190bcabb4d80e36a8e832d6dc3c9",
"s3_uri": "s3://igvf-files/2024/09/16/b33a34c0-2127-4877-93dc-5ba595c7e1c5/IGVFFI7974XXAH.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1695JPXJ/",
"accession": "IGVFFI1695JPXJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:32.001304+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI1695JPXJ/@@download/IGVFFI1695JPXJ.yaml.gz",
"md5sum": "96b0db3e036dfec9ebb2a442236d4111",
"s3_uri": "s3://igvf-files/2024/09/16/d90d892f-6eaa-49b6-b557-82d95f78b3f6/IGVFFI1695JPXJ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1721KXQQ/",
"accession": "IGVFFI1721KXQQ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:33.191083+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI1721KXQQ/@@download/IGVFFI1721KXQQ.yaml.gz",
"md5sum": "bfc8e377cb25fac80f3c2189bfa880e9",
"s3_uri": "s3://igvf-files/2024/09/16/24cb76d5-f6e5-4899-9395-2a21c23d722f/IGVFFI1721KXQQ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6630MQUT/",
"accession": "IGVFFI6630MQUT",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:26.419838+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI6630MQUT/@@download/IGVFFI6630MQUT.yaml.gz",
"md5sum": "7ddd5e9a920c334a45daa82b2cb8eb7a",
"s3_uri": "s3://igvf-files/2024/09/16/28edf859-06fe-4555-88f4-77657301ae88/IGVFFI6630MQUT.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4534LZMC/",
"accession": "IGVFFI4534LZMC",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:27.726064+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI4534LZMC/@@download/IGVFFI4534LZMC.yaml.gz",
"md5sum": "d551164d64a86feccb0f7c29c08576c3",
"s3_uri": "s3://igvf-files/2024/09/16/9efdfc77-5ffb-423f-8654-aee2565768a7/IGVFFI4534LZMC.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9805SDBQ/",
"accession": "IGVFFI9805SDBQ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:30.632764+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI9805SDBQ/@@download/IGVFFI9805SDBQ.yaml.gz",
"md5sum": "a7cf9ef21fe4510a59da66b759f0b7a8",
"s3_uri": "s3://igvf-files/2024/09/16/3075d600-83ff-45b2-bbe7-1dce6a76b801/IGVFFI9805SDBQ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3810YXJD/",
"accession": "IGVFFI3810YXJD",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:29.384255+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI3810YXJD/@@download/IGVFFI3810YXJD.yaml.gz",
"md5sum": "15a77dd3ccd5c28ac2de64dc232b162d",
"s3_uri": "s3://igvf-files/2024/09/16/c78a5bec-b505-4117-bd87-5f051ef0dbb5/IGVFFI3810YXJD.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4574PXUY/",
"accession": "IGVFFI4574PXUY",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:27:34.363395+00:00",
"file_format": "yaml",
"file_size": 1347,
"href": "/configuration-files/IGVFFI4574PXUY/@@download/IGVFFI4574PXUY.yaml.gz",
"md5sum": "f48d289537bd88e6a002eee9908bec8d",
"s3_uri": "s3://igvf-files/2024/09/16/9665ec6b-3d76-4dc6-98e8-c3e7577e3a79/IGVFFI4574PXUY.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS1231FZHE/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-kxygx396zg8j/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-18T23:19:27.169306+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9331UHES/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9331UHES",
"aliases": [
"ali-mortazavi:subpool_004_67N"
],
"cellular_sub_pool": "004_67N",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "heart",
"term_name": "heart"
},
{
"@id": "/sample-terms/UBERON_0002107/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "liver",
"term_name": "liver"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-06T09:42:09.936450+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "68a63fec-d756-48b8-ac6b-528109e526e3"
}