{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7743BHBV/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7743BHBV",
"aliases": [
"bradley-bernstein:scRNA Lib 35",
"buenrostro-bernstein:scRNA Lib 35"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7743BHBV](/measurement-sets/IGVFDS7743BHBV/) has sequence file(s): [IGVFFI5818WLFU](/sequence-files/IGVFFI5818WLFU/), [IGVFFI2021TZEM](/sequence-files/IGVFFI2021TZEM/), [IGVFFI3151VPAC](/sequence-files/IGVFFI3151VPAC/), [IGVFFI0722DWDK](/sequence-files/IGVFFI0722DWDK/), [IGVFFI6001LPLW](/sequence-files/IGVFFI6001LPLW/), [IGVFFI0022NHKA](/sequence-files/IGVFFI0022NHKA/), [IGVFFI7749WIBZ](/sequence-files/IGVFFI7749WIBZ/), [IGVFFI5472OHOH](/sequence-files/IGVFFI5472OHOH/), [IGVFFI9186CGSY](/sequence-files/IGVFFI9186CGSY/), [IGVFFI6398TIMB](/sequence-files/IGVFFI6398TIMB/), [IGVFFI8970OYVB](/sequence-files/IGVFFI8970OYVB/), [IGVFFI5982ZHLY](/sequence-files/IGVFFI5982ZHLY/), [IGVFFI9734PFWX](/sequence-files/IGVFFI9734PFWX/), [IGVFFI1235ITSN](/sequence-files/IGVFFI1235ITSN/), [IGVFFI2366MPLS](/sequence-files/IGVFFI2366MPLS/), [IGVFFI7840EDMY](/sequence-files/IGVFFI7840EDMY/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7743BHBV/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3503TNKW](/primary-cells/IGVFSM3503TNKW/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3503TNKW/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7743BHBV](/measurement-sets/IGVFDS7743BHBV/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7743BHBV/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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}
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"bradley-bernstein:BioSam 4567_SS-PKR 6",
"buenrostro-bernstein:BioSam 4567_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:51.912274+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "c934edf7-abf0-4e41-9911-a7346a0f59f9"
}