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INDEXED
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MeasurementSet
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IGVFDS7709QUBW
IGVFDS7709QUBW
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
bradley-bernstein:scRNA Lib 125
buenrostro-bernstein:scRNA Lib 125
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0497NCHE
fastq
reads
R1
255
Read 1
IGVFFI2217QEJK
Illumina NovaSeq 6000
449 MB
Jason Buenrostro, Broad
validated
IGVFFI2323ENMV
fastq
reads
R2
255
Read 2, Barcode index
IGVFFI2217QEJK
Illumina NovaSeq 6000
656 MB
Jason Buenrostro, Broad
validated
IGVFFI7538HUYL
fastq
reads
R2
265
Read 2, Barcode index
IGVFFI2071OYMR
Illumina NovaSeq 6000
623 MB
Jason Buenrostro, Broad
validated
IGVFFI9409TJIS
fastq
reads
R1
265
Read 1
IGVFFI2071OYMR
Illumina NovaSeq 6000
426 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9781HISX
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1318PLKS
bradley-bernstein:Donor 1503
buenrostro-bernstein:Donor 1503
female
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4147RERW
AnalysisSet
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:AnalysisSet_BioSam-4561_SS-PKR-131
Jason Buenrostro, Broad
Related Multiome Datasets
5 items
Accession
Type
Summary
Aliases
Lab
IGVFDS0956TMWA
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 116
buenrostro-bernstein:scATAC Lib 116
Jason Buenrostro, Broad
IGVFDS4464LQXA
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 126
buenrostro-bernstein:scRNA Lib 126
Jason Buenrostro, Broad
IGVFDS8248GGOY
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 124
buenrostro-bernstein:scRNA Lib 124
Jason Buenrostro, Broad
IGVFDS8528TQHC
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 115
buenrostro-bernstein:scATAC Lib 115
Jason Buenrostro, Broad
IGVFDS8645IDXO
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 117
buenrostro-bernstein:scATAC Lib 117
Jason Buenrostro, Broad