{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7674GILZ",
"aliases": [
"bradley-bernstein:scRNA Lib 5",
"buenrostro-bernstein:scRNA Lib 5"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7674GILZ](/measurement-sets/IGVFDS7674GILZ/) has sequence file(s): [IGVFFI2858ZKDC](/sequence-files/IGVFFI2858ZKDC/), [IGVFFI4537UZFG](/sequence-files/IGVFFI4537UZFG/), [IGVFFI8748DECL](/sequence-files/IGVFFI8748DECL/), [IGVFFI1730XGAR](/sequence-files/IGVFFI1730XGAR/), [IGVFFI1731JMFA](/sequence-files/IGVFFI1731JMFA/), [IGVFFI0623EBYN](/sequence-files/IGVFFI0623EBYN/), [IGVFFI5062HWQY](/sequence-files/IGVFFI5062HWQY/), [IGVFFI1628GODB](/sequence-files/IGVFFI1628GODB/), [IGVFFI6904DSPG](/sequence-files/IGVFFI6904DSPG/), [IGVFFI4889UNPV](/sequence-files/IGVFFI4889UNPV/), [IGVFFI6653FKXP](/sequence-files/IGVFFI6653FKXP/), [IGVFFI9389WTPT](/sequence-files/IGVFFI9389WTPT/), [IGVFFI2714LCIR](/sequence-files/IGVFFI2714LCIR/), [IGVFFI2996TFHU](/sequence-files/IGVFFI2996TFHU/), [IGVFFI1675XTUE](/sequence-files/IGVFFI1675XTUE/), [IGVFFI8778MESJ](/sequence-files/IGVFFI8778MESJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7674GILZ/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8523CFBV](/primary-cells/IGVFSM8523CFBV/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8523CFBV/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7674GILZ](/measurement-sets/IGVFDS7674GILZ/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7674GILZ/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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"accession": "IGVFSM8523CFBV",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 1",
"buenrostro-bernstein:BioSam 4567_SS-PKR 1"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:28.896747+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "09a7b1a4-83a7-4983-a261-20a5f30af22c"
}