IGVFDS7635GZJI

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS7635GZJI/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS7635GZJI",
    "aliases": [
        "buenrostro-bernstein:scATAC Lib 455"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0002764/",
        "assay_slims": [
            "chromatin accessibility"
        ],
        "status": "released",
        "term_name": "single-cell ATAC-seq"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM2051NVYB](/in-vitro-systems/IGVFSM2051NVYB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM2051NVYB/"
            },
            {
                "category": "missing publication",
                "detail": "Measurement set [IGVFDS7635GZJI](/measurement-sets/IGVFDS7635GZJI/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/measurement-sets/IGVFDS7635GZJI/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS7635GZJI](/measurement-sets/IGVFDS7635GZJI/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS7635GZJI/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS7635GZJI](/measurement-sets/IGVFDS7635GZJI/) has in progress subobject tabular file [IGVFFI5586QIXE](/tabular-files/IGVFFI5586QIXE/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS7635GZJI/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing strand specificity",
                "detail": "Measurement set [IGVFDS7635GZJI](/measurement-sets/IGVFDS7635GZJI/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_missing_strand_specificity",
                "path": "/measurement-sets/IGVFDS7635GZJI/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
            "title": "Jason Buenrostro"
        },
        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
    },
    "control_for": [],
    "controlled_access": true,
    "creation_timestamp": "2024-08-20T15:00:56.772109+00:00",
    "data_use_limitation_summaries": [
        "GRU"
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO4689NFPC/",
            "accession": "IGVFDO4689NFPC",
            "aliases": [
                "buenrostro-bernstein:Donor 1770"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3937NOVL/",
            "accession": "IGVFDO3937NOVL",
            "aliases": [
                "buenrostro-bernstein:Donor 1858"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9942ECYN/",
            "accession": "IGVFDO9942ECYN",
            "aliases": [
                "buenrostro-bernstein:Donor 1742"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0233FJJF/",
            "accession": "IGVFDO0233FJJF",
            "aliases": [
                "buenrostro-bernstein:Donor 1834"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0875HNRV/",
            "accession": "IGVFDO0875HNRV",
            "aliases": [
                "buenrostro-bernstein:Donor 1895"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2044WGSW/",
            "accession": "IGVFDO2044WGSW",
            "aliases": [
                "buenrostro-bernstein:Donor 1856"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1318DUVG/",
            "accession": "IGVFDO1318DUVG",
            "aliases": [
                "buenrostro-bernstein:Donor 1833"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2131TKFT/",
            "accession": "IGVFDO2131TKFT",
            "aliases": [
                "buenrostro-bernstein:Donor 1811"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7956CWXZ/",
            "accession": "IGVFDO7956CWXZ",
            "aliases": [
                "buenrostro-bernstein:Donor 1821"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1906JPPE/",
            "accession": "IGVFDO1906JPPE",
            "aliases": [
                "buenrostro-bernstein:Donor 1893"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2343ZVKW/",
            "accession": "IGVFDO2343ZVKW",
            "aliases": [
                "buenrostro-bernstein:Donor 1869"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6837BSOS/",
            "accession": "IGVFDO6837BSOS",
            "aliases": [
                "buenrostro-bernstein:Donor 1812"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2142TSPQ/",
            "accession": "IGVFDO2142TSPQ",
            "aliases": [
                "buenrostro-bernstein:Donor 1881"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9594EWNE/",
            "accession": "IGVFDO9594EWNE",
            "aliases": [
                "buenrostro-bernstein:Donor 1878"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5446TLJJ/",
            "accession": "IGVFDO5446TLJJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1894"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0143YSWQ/",
            "accession": "IGVFDO0143YSWQ",
            "aliases": [
                "buenrostro-bernstein:Donor 1860"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6316KUFG/",
            "accession": "IGVFDO6316KUFG",
            "aliases": [
                "buenrostro-bernstein:Donor 1871"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1429GCHH/",
            "accession": "IGVFDO1429GCHH",
            "aliases": [
                "buenrostro-bernstein:Donor 1810"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0527HIIJ/",
            "accession": "IGVFDO0527HIIJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1838"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6180JBWH/",
            "accession": "IGVFDO6180JBWH",
            "aliases": [
                "buenrostro-bernstein:Donor 1855"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0452ROLO/",
            "accession": "IGVFDO0452ROLO",
            "aliases": [
                "buenrostro-bernstein:Donor 1867"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4141QBHD/",
            "accession": "IGVFDO4141QBHD",
            "aliases": [
                "buenrostro-bernstein:Donor 1883"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6553AADC/",
            "accession": "IGVFDO6553AADC",
            "aliases": [
                "buenrostro-bernstein:Donor 1841"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0436YOXD/",
            "accession": "IGVFDO0436YOXD",
            "aliases": [
                "buenrostro-bernstein:Donor 1745"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6295KHUE/",
            "accession": "IGVFDO6295KHUE",
            "aliases": [
                "buenrostro-bernstein:Donor 1863"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7817ENDD/",
            "accession": "IGVFDO7817ENDD",
            "aliases": [
                "buenrostro-bernstein:Donor 1877"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5748WCDL/",
            "accession": "IGVFDO5748WCDL",
            "aliases": [
                "buenrostro-bernstein:Donor 1889"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0166JLWT/",
            "accession": "IGVFDO0166JLWT",
            "aliases": [
                "buenrostro-bernstein:Donor 1816"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9707NUOC/",
            "accession": "IGVFDO9707NUOC",
            "aliases": [
                "buenrostro-bernstein:Donor 1859"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1656HYLL/",
            "accession": "IGVFDO1656HYLL",
            "aliases": [
                "buenrostro-bernstein:Donor 1847"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5342CGKC/",
            "accession": "IGVFDO5342CGKC",
            "aliases": [
                "buenrostro-bernstein:Donor 1882"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0273LMQQ/",
            "accession": "IGVFDO0273LMQQ",
            "aliases": [
                "buenrostro-bernstein:Donor 1876"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0674VHCY/",
            "accession": "IGVFDO0674VHCY",
            "aliases": [
                "buenrostro-bernstein:Donor 1896"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3364ORGK/",
            "accession": "IGVFDO3364ORGK",
            "aliases": [
                "buenrostro-bernstein:Donor 1897"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7983CLUG/",
            "accession": "IGVFDO7983CLUG",
            "aliases": [
                "buenrostro-bernstein:Donor 1852"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7476FWEA/",
            "accession": "IGVFDO7476FWEA",
            "aliases": [
                "buenrostro-bernstein:Donor 1851"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5333XVCI/",
            "accession": "IGVFDO5333XVCI",
            "aliases": [
                "buenrostro-bernstein:Donor 1818"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6328ESSA/",
            "accession": "IGVFDO6328ESSA",
            "aliases": [
                "buenrostro-bernstein:Donor 1768"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0392YIJG/",
            "accession": "IGVFDO0392YIJG",
            "aliases": [
                "buenrostro-bernstein:Donor 1892"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5257YVJL/",
            "accession": "IGVFDO5257YVJL",
            "aliases": [
                "buenrostro-bernstein:Donor 1825"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0995XOJH/",
            "accession": "IGVFDO0995XOJH",
            "aliases": [
                "buenrostro-bernstein:Donor 1872"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5895ABMM/",
            "accession": "IGVFDO5895ABMM",
            "aliases": [
                "buenrostro-bernstein:Donor 1824"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7542OMCX/",
            "accession": "IGVFDO7542OMCX",
            "aliases": [
                "buenrostro-bernstein:Donor 1819"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5829IPZL/",
            "accession": "IGVFDO5829IPZL",
            "aliases": [
                "buenrostro-bernstein:Donor 1772"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9737GFZX/",
            "accession": "IGVFDO9737GFZX",
            "aliases": [
                "buenrostro-bernstein:Donor 1839"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1778GJAD/",
            "accession": "IGVFDO1778GJAD",
            "aliases": [
                "buenrostro-bernstein:Donor 1778"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7567RWAK/",
            "accession": "IGVFDO7567RWAK",
            "aliases": [
                "buenrostro-bernstein:Donor 1857"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6556DSRS/",
            "accession": "IGVFDO6556DSRS",
            "aliases": [
                "buenrostro-bernstein:Donor 1848"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3773GAHC/",
            "accession": "IGVFDO3773GAHC",
            "aliases": [
                "buenrostro-bernstein:Donor 1817"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0597VIVH/",
            "accession": "IGVFDO0597VIVH",
            "aliases": [
                "buenrostro-bernstein:Donor 1874"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3469EFJR/",
            "accession": "IGVFDO3469EFJR",
            "aliases": [
                "buenrostro-bernstein:Donor 1741"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4197GLLD/",
            "accession": "IGVFDO4197GLLD",
            "aliases": [
                "buenrostro-bernstein:Donor 1866"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6704FGWL/",
            "accession": "IGVFDO6704FGWL",
            "aliases": [
                "buenrostro-bernstein:Donor 1875"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2628QOSP/",
            "accession": "IGVFDO2628QOSP",
            "aliases": [
                "buenrostro-bernstein:Donor 1830"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0144AKUR/",
            "accession": "IGVFDO0144AKUR",
            "aliases": [
                "buenrostro-bernstein:Donor 1850"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8979DYIF/",
            "accession": "IGVFDO8979DYIF",
            "aliases": [
                "buenrostro-bernstein:Donor 1743"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1215CYXN/",
            "accession": "IGVFDO1215CYXN",
            "aliases": [
                "buenrostro-bernstein:Donor 1843"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8250RHCQ/",
            "accession": "IGVFDO8250RHCQ",
            "aliases": [
                "buenrostro-bernstein:Donor 1854"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2028ZXZQ/",
            "accession": "IGVFDO2028ZXZQ",
            "aliases": [
                "buenrostro-bernstein:Donor 1820"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2664ZLXL/",
            "accession": "IGVFDO2664ZLXL",
            "aliases": [
                "buenrostro-bernstein:Donor 1891"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2015BBZM/",
            "accession": "IGVFDO2015BBZM",
            "aliases": [
                "buenrostro-bernstein:Donor 1813"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2372UULO/",
            "accession": "IGVFDO2372UULO",
            "aliases": [
                "buenrostro-bernstein:Donor 1840"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9301UFXR/",
            "accession": "IGVFDO9301UFXR",
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    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_files_timestamp": "2024-08-20T15:25:21.242818+00:00",
    "summary": "single-cell ATAC-seq (SHARE-seq)",
    "uuid": "debfb3bf-d237-4c35-9eca-174278b33f40"
}