{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7609ZEMW",
"aliases": [
"bradley-bernstein:scATAC Lib 24",
"buenrostro-bernstein:scATAC Lib 24"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM6786RHZK](/primary-cells/IGVFSM6786RHZK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM6786RHZK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7609ZEMW](/measurement-sets/IGVFDS7609ZEMW/) has sequence file(s): [IGVFFI2280MQKE](/sequence-files/IGVFFI2280MQKE/), [IGVFFI6088LWZM](/sequence-files/IGVFFI6088LWZM/), [IGVFFI7980JUNN](/sequence-files/IGVFFI7980JUNN/), [IGVFFI2485FZRV](/sequence-files/IGVFFI2485FZRV/), [IGVFFI9513BOAZ](/sequence-files/IGVFFI9513BOAZ/), [IGVFFI6176LNYE](/sequence-files/IGVFFI6176LNYE/), [IGVFFI0422USNQ](/sequence-files/IGVFFI0422USNQ/), [IGVFFI2686ADHM](/sequence-files/IGVFFI2686ADHM/), [IGVFFI4119SRLT](/sequence-files/IGVFFI4119SRLT/), [IGVFFI0860SJKQ](/sequence-files/IGVFFI0860SJKQ/), [IGVFFI1606PTCN](/sequence-files/IGVFFI1606PTCN/), [IGVFFI8522KJBG](/sequence-files/IGVFFI8522KJBG/), [IGVFFI3904QEHZ](/sequence-files/IGVFFI3904QEHZ/), [IGVFFI5908MQJS](/sequence-files/IGVFFI5908MQJS/), [IGVFFI0967SVAX](/sequence-files/IGVFFI0967SVAX/), [IGVFFI2815UPZT](/sequence-files/IGVFFI2815UPZT/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7609ZEMW/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7609ZEMW](/measurement-sets/IGVFDS7609ZEMW/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7609ZEMW/"
}
]
},
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},
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},
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"accession": "IGVFSM6786RHZK",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 4",
"buenrostro-bernstein:BioSam 4568_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:14.517348+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "4bb37958-14a6-4db7-8225-c32e68a0e2ef"
}