Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS7606ECSX
IGVFDS7606ECSX
released
Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C39_day14
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0959DFDX
fastq
reads
R1
1
Illumina NovaSeq X
8
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI2422WTGH
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
4
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI3026GVWR
fastq
reads
R1
1
Illumina NovaSeq X
5
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI3063EPJI
fastq
reads
R1
1
Illumina NovaSeq X
2
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI3516UBXF
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
5
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI3575TGLX
fastq
reads
R1
1
Illumina NovaSeq X
4
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI4565EKNC
fastq
reads
R2
2
Illumina NovaSeq X
6
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI4778HVIU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
6
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI5263IBLI
fastq
reads
R2
2
Illumina NovaSeq X
7
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI6530GMVH
fastq
reads
R2
2
Illumina NovaSeq X
3
2.9 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3325VZXM
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA