{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7586SUPO",
"aliases": [
"bradley-bernstein:scRNA Lib 18",
"buenrostro-bernstein:scRNA Lib 18"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8105KQWG](/primary-cells/IGVFSM8105KQWG/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8105KQWG/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7586SUPO](/measurement-sets/IGVFDS7586SUPO/) has sequence file(s): [IGVFFI3023AGFQ](/sequence-files/IGVFFI3023AGFQ/), [IGVFFI5997YJUE](/sequence-files/IGVFFI5997YJUE/), [IGVFFI8148IAVM](/sequence-files/IGVFFI8148IAVM/), [IGVFFI3475JRYN](/sequence-files/IGVFFI3475JRYN/), [IGVFFI2542YZLI](/sequence-files/IGVFFI2542YZLI/), [IGVFFI6578TTPR](/sequence-files/IGVFFI6578TTPR/), [IGVFFI9673BSIX](/sequence-files/IGVFFI9673BSIX/), [IGVFFI7699WTMJ](/sequence-files/IGVFFI7699WTMJ/), [IGVFFI2855WTOW](/sequence-files/IGVFFI2855WTOW/), [IGVFFI6149UHTE](/sequence-files/IGVFFI6149UHTE/), [IGVFFI2284WZUO](/sequence-files/IGVFFI2284WZUO/), [IGVFFI0019SIZY](/sequence-files/IGVFFI0019SIZY/), [IGVFFI8753YHHF](/sequence-files/IGVFFI8753YHHF/), [IGVFFI5973TSWS](/sequence-files/IGVFFI5973TSWS/), [IGVFFI1642ESMV](/sequence-files/IGVFFI1642ESMV/), [IGVFFI1839RCNR](/sequence-files/IGVFFI1839RCNR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7586SUPO/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7586SUPO](/measurement-sets/IGVFDS7586SUPO/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7586SUPO/"
}
]
},
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},
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},
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],
"accession": "IGVFSM8105KQWG",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 3",
"buenrostro-bernstein:BioSam 4568_SS-PKR 3"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:11.413011+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "90aa6543-ef29-441c-9430-8fe476498d9f"
}