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IGVFDS7572ZDYQ
IGVFDS7572ZDYQ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP018_G4_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0169JLLN
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
3
685 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1052PNUT
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
2
594 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2459KMWN
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
4
4.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2888OVNF
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
1
666 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4039KNBK
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
3
585 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4478TIDN
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
1
4.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5107ISGW
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
4
687 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6027EFTW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
1
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6247FEEO
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
1
570 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6785GJJU
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
2
4.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1416OTQT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4812DEVH
igvf:corces_donor_BANN1833
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8112LERP
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP018_G4_ATAC
Ryan Corces, Gladstone Institute UCSF