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IGVFDS7538AGGA

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 208)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 606
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

36 items
Read Names
fastq
reads
I1
8716
Barcode index
22LMVNLT4
261 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
3866
Read 2
22523KLT3
238 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8524
Barcode index
22LMVNLT4
267 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8812
Read 2
22LMVNLT4
428 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
4349
Read 2
H75F7DSX5
582 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
4349
Read 1
H75F7DSX5
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8908
Read 1
22LMVNLT4
445 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8524
Read 1
22LMVNLT4
459 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8716
Read 2
22LMVNLT4
435 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8620
Barcode index
22LMVNLT4
257 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 208)

Donors

99 items
Aliases
  • buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 249
Jason Buenrostro, Broad